-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_407

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5311, 5395
Sorry, prediction GlimmerHMM_glimmerT_60301-T1 fails validation.
(ATG)	 AG	2464-2556	GT	GAG
(GGC)	 AG	3995-4120	GT	AGG
(TCG)	 AG	5311-5395	GT	GGG
-recovered GlimmerHMM_glimmerT_60301-T1, initial, 2464, 2556
-recovered GlimmerHMM_glimmerT_60301-T1, internal, 2464, 2556
-recovered GlimmerHMM_glimmerT_60301-T1, internal, 3995, 4120
-recovered GlimmerHMM_glimmerT_60301-T1, internal, 5311, 5395
Valid prediction for snap_scaffold_407-snap.1-T1
Couldn't classify 6497, 6566
Sorry, prediction snap_scaffold_407-snap.2-T1 fails validation.
(ATG)	 AT	5870-5899	GT	TGG
(CTG)	 AG	6141-6228	GT	GAG
(AAC)	 AG	6497-6566	GT	ACG
-recovered snap_scaffold_407-snap.2-T1, initial, 5870, 5899
add_exon() Sorry, snap_scaffold_407-snap.2-T1 6141-6228-terminal-3 is invalid.
-recovered snap_scaffold_407-snap.2-T1, terminal, 6141, 6228
-recovered snap_scaffold_407-snap.2-T1, internal, 6141, 6228
-recovered snap_scaffold_407-snap.2-T1, internal, 6497, 6566
Valid prediction for Augustus_model.g39919.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7227
-exon list size: 18


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support