-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_405

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1894, 2055
Couldn't classify 2909, 2982
Sorry, prediction pasa_asmbl_43675.p1 fails validation.
(GTC)	 AG	1894-2055	GT	TGG
(AGG)	 AG	2296-2461	GT	AGG
(ATG)	 AG	2909-2982	GT	AGG
add_exon() Sorry, pasa_asmbl_43675.p1 2909-2982-initial-1 is invalid.
-recovered pasa_asmbl_43675.p1, initial, 2909, 2982
-recovered pasa_asmbl_43675.p1, internal, 1894, 2055
-recovered pasa_asmbl_43675.p1, internal, 2296, 2461
-recovered pasa_asmbl_43675.p1, internal, 2909, 2982
Couldn't classify 1894, 2055
Sorry, prediction snap_scaffold_405-snap.1-T1 fails validation.
(GTC)	 AG	1894-2055	GT	TGG
(AGG)	 AG	2296-2673	GG	GAG
-recovered snap_scaffold_405-snap.1-T1, terminal, 2296, 2673
-recovered snap_scaffold_405-snap.1-T1, internal, 1894, 2055
Couldn't classify 1894, 2055
Sorry, prediction Augustus_model.g39917.t1 fails validation.
(GTC)	 AG	1894-2055	GT	TGG
(AGG)	 AG	2296-2461	GT	AGG
(ATG)	 AG	2909-2982	GT	AGG
(AAC)	 AG	3998-4054	GC	GAG
add_exon() Sorry, Augustus_model.g39917.t1 2909-2982-initial-1 is invalid.
-recovered Augustus_model.g39917.t1, initial, 2909, 2982
-recovered Augustus_model.g39917.t1, terminal, 3998, 4054
-recovered Augustus_model.g39917.t1, internal, 1894, 2055
-recovered Augustus_model.g39917.t1, internal, 2296, 2461
-recovered Augustus_model.g39917.t1, internal, 2909, 2982
-recovered Augustus_model.g39917.t1, internal, 3998, 4054
Valid prediction for GlimmerHMM_glimmerT_60299-T1
Couldn't classify 3826, 3960
Sorry, prediction snap_scaffold_405-snap.2-T1 fails validation.
(ATG)	 GG	2685-2709	GT	GGG
(ATG)	 AG	2909-2982	GT	AGG
(ACG)	 AG	3826-3960	GT	CAG
-recovered snap_scaffold_405-snap.2-T1, initial, 2685, 2709
add_exon() Sorry, snap_scaffold_405-snap.2-T1 2909-2982-initial-1 is invalid.
-recovered snap_scaffold_405-snap.2-T1, initial, 2909, 2982
-recovered snap_scaffold_405-snap.2-T1, internal, 2909, 2982
-recovered snap_scaffold_405-snap.2-T1, internal, 3826, 3960

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7243
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support