-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_402

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 239, 376
Couldn't classify 6569, 6651
Sorry, prediction snap_scaffold_402-snap.2-T1 fails validation.
(GGA)	 AG	239-376	GT	GGG
(GAT)	 AG	573-845	GT	GGG
(GAG)	 AG	4055-4135	GT	GGG
(CTC)	 AG	5776-5833	GT	CGG
(TTC)	 AG	6569-6651	GT	AGG
-recovered snap_scaffold_402-snap.2-T1, internal, 239, 376
-recovered snap_scaffold_402-snap.2-T1, internal, 573, 845
-recovered snap_scaffold_402-snap.2-T1, internal, 4055, 4135
-recovered snap_scaffold_402-snap.2-T1, internal, 5776, 5833
-recovered snap_scaffold_402-snap.2-T1, internal, 6569, 6651

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6955, 7069
Sorry, prediction snap_scaffold_402-snap.1-T1 fails validation.
(ATG)	 TA	1411-1479	GT	CGG
(ATA)	 AG	3071-3123	GT	ATG
(CCC)	 AG	3146-3698	GT	CGG
(TTT)	 AG	6491-6739	GT	AGG
(GTC)	 AG	6955-7069	GT	CTG
-recovered snap_scaffold_402-snap.1-T1, initial, 1411, 1479
-recovered snap_scaffold_402-snap.1-T1, internal, 3071, 3123
-recovered snap_scaffold_402-snap.1-T1, internal, 3146, 3698
-recovered snap_scaffold_402-snap.1-T1, internal, 6491, 6739
-recovered snap_scaffold_402-snap.1-T1, internal, 6955, 7069
Valid prediction for CodingQuarry_transcript_49428-T1
Valid prediction for GlimmerHMM_glimmerT_60295-T1
Couldn't classify 6491, 6739
Sorry, prediction pasa_asmbl_43671.p1 fails validation.
(TTT)	 AG	6491-6739	GT	AGG
(GTC)	 AG	6955-7128	CA	GAC
-recovered pasa_asmbl_43671.p1, terminal, 6955, 7128
-recovered pasa_asmbl_43671.p1, internal, 6491, 6739
Valid prediction for Augustus_model.g39914.t1
Valid prediction for Augustus_model.g39915.t1
Couldn't classify 3377, 3701
Sorry, prediction pasa_asmbl_43672.p1 fails validation.
(ATG)	 CG	3078-3097	GT	CAG
(GGG)	 AG	3377-3701	GA	TGG
-recovered pasa_asmbl_43672.p1, initial, 3078, 3097

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5865, rend_intergenic: 239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7275
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5865, rend_intergenic: 239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support