-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_401

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39913.t1
Valid prediction for Augustus_model.g39912.t1
Couldn't classify 562, 783
Sorry, prediction pasa_asmbl_43668.p1 fails validation.
(GCA)	 AG	562-783	GT	AGG
(AAC)	 AG	1342-1569	TA	GAT
-recovered pasa_asmbl_43668.p1, terminal, 1342, 1569
-recovered pasa_asmbl_43668.p1, internal, 562, 783
Valid prediction for GlimmerHMM_glimmerT_60294-T1
Valid prediction for GlimmerHMM_glimmerT_60293-T1
Couldn't classify 550, 783
Sorry, prediction snap_scaffold_401-snap.1-T1 fails validation.
(CGC)	 AG	550-783	GT	AGG
(TAC)	 AG	1411-1501	GT	AGG
(GAC)	 AG	2193-2215	GT	ATG
(CTC)	 AG	2368-2886	AG	AGA
-recovered snap_scaffold_401-snap.1-T1, terminal, 2368, 2886
-recovered snap_scaffold_401-snap.1-T1, internal, 550, 783
-recovered snap_scaffold_401-snap.1-T1, internal, 1411, 1501
-recovered snap_scaffold_401-snap.1-T1, internal, 2193, 2215
Couldn't classify 550, 783
Sorry, prediction Augustus_model.g39910.t1 fails validation.
(CGC)	 AG	550-783	GT	AGG
(AAC)	 AG	1342-1501	GT	AGG
(TCT)	 AG	2156-2215	GT	ATG
(ATT)	 AG	2357-2364	CA	GAC
-recovered Augustus_model.g39910.t1, terminal, 2357, 2364
-recovered Augustus_model.g39910.t1, internal, 550, 783
-recovered Augustus_model.g39910.t1, internal, 1342, 1501
-recovered Augustus_model.g39910.t1, internal, 2156, 2215
Couldn't classify 2401, 2886
Sorry, prediction pasa_asmbl_43669.p1 fails validation.
(CTC)	 AC	2401-2886	AG	AGA
Valid prediction for snap_scaffold_401-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_401-snap.2-T1
Valid prediction for Augustus_model.g39911.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2886, rend_intergenic: 1375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7275
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 2886, rend_intergenic: 1375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support