-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_40

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_40-snap.5-T1
Valid prediction for GlimmerHMM_glimmerT_59539-T1
Valid prediction for snap_scaffold_40-snap.3-T1
Valid prediction for Augustus_model.g39435.t1
Valid prediction for GlimmerHMM_glimmerT_59537-T1
Valid prediction for GlimmerHMM_glimmerT_59543-T1
Valid prediction for GlimmerHMM_glimmerT_59542-T1
Couldn't classify 31101, 31272
Sorry, prediction GlimmerHMM_glimmerT_59545-T1 fails validation.
(ATG)	 CC	30483-30709	GT	TGG
(GCG)	 AG	31101-31272	GT	AGG
-recovered GlimmerHMM_glimmerT_59545-T1, initial, 30483, 30709
-recovered GlimmerHMM_glimmerT_59545-T1, internal, 31101, 31272
Valid prediction for Augustus_model.g39438.t1
Valid prediction for snap_scaffold_40-snap.7-T1
Valid prediction for Augustus_model.g39437.t1
Valid prediction for GlimmerHMM_glimmerT_59541-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39436.t1
Valid prediction for snap_scaffold_40-snap.1-T1
Valid prediction for Augustus_model.g39433.t1
Valid prediction for GlimmerHMM_glimmerT_59535-T1
Valid prediction for snap_scaffold_40-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59540-T1
Valid prediction for GlimmerHMM_glimmerT_59544-T1
Valid prediction for GlimmerHMM_glimmerT_59536-T1
Valid prediction for snap_scaffold_40-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_59538-T1
Valid prediction for snap_scaffold_40-snap.6-T1
Valid prediction for Augustus_model.g39434.t1
Couldn't classify 4735, 5271
Sorry, prediction pasa_asmbl_43666.p1 fails validation.
(CCC)	 AA	4735-5271	AC	TGA

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 32659
-exon list size: 70


building trellis

1.4    
2.8    
4.2    
5.6    
6.9    
8.3    
9.7    
11.1    
12.5    
13.9    
15.3    
16.7    
18.1    
19.4    
20.8    
22.2    
23.6    
25.0    
26.4    
27.8    
29.2    
30.6    
31.9    
33.3    
34.7    
36.1    
37.5    
38.9    
40.3    
41.7    
43.1    
44.4    
45.8    
47.2    
48.6    
50.0    
51.4    
52.8    
54.2    
55.6    
56.9    
58.3    
59.7    
61.1    
62.5    
63.9    
65.3    
66.7    
68.1    
69.4    
70.8    
72.2    
73.6    
75.0    
76.4    
77.8    
79.2    
80.6    
81.9    
83.3    
84.7    
86.1    
87.5    
88.9    
90.3    
91.7    
93.1    
94.4    
95.8    
97.2    
98.6    
-found 7 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support