-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_4/scaffold_4_9587644-9713509

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_4-snap.2050-T1
Valid prediction for snap_scaffold_4-snap.2039-T1
Valid prediction for snap_scaffold_4-snap.2042-T1
Valid prediction for snap_scaffold_4-snap.2048-T1
Valid prediction for snap_scaffold_4-snap.2030-T1
Valid prediction for Augustus_model.g6478.t1
Valid prediction for HiQ_model.g6469.t1
Valid prediction for GlimmerHMM_glimmerT_9956-T1
Valid prediction for GlimmerHMM_glimmerT_9963-T1
Valid prediction for snap_scaffold_4-snap.2056-T1
Valid prediction for snap_scaffold_4-snap.2040-T1
Valid prediction for snap_scaffold_4-snap.2052-T1
Valid prediction for GlimmerHMM_glimmerT_9965-T1
Valid prediction for GlimmerHMM_glimmerT_9970-T1
Valid prediction for GlimmerHMM_glimmerT_9952-T1
Valid prediction for Augustus_model.g6470.t1
Valid prediction for GlimmerHMM_glimmerT_9955-T1
Couldn't classify 68253, 68684
Sorry, prediction pasa_asmbl_41618.p1 fails validation.
(CAT)	 CT	68253-68684	CC	AGC
Valid prediction for Augustus_model.g6468.t1
Valid prediction for snap_scaffold_4-snap.2033-T1
Valid prediction for Augustus_model.g6466.t1
Valid prediction for GlimmerHMM_glimmerT_9971-T1
Valid prediction for GlimmerHMM_glimmerT_9954-T1
Valid prediction for GlimmerHMM_glimmerT_9957-T1
Valid prediction for snap_scaffold_4-snap.2031-T1
Valid prediction for Augustus_model.g6473.t1
Valid prediction for snap_scaffold_4-snap.2047-T1
Valid prediction for snap_scaffold_4-snap.2053-T1
Valid prediction for GlimmerHMM_glimmerT_9949-T1
Valid prediction for GlimmerHMM_glimmerT_9950-T1
Valid prediction for CodingQuarry_transcript_49099-T1
Valid prediction for Augustus_model.g6479.t1
Valid prediction for snap_scaffold_4-snap.2038-T1
Valid prediction for GlimmerHMM_glimmerT_9967-T1
Valid prediction for GlimmerHMM_glimmerT_9953-T1
Valid prediction for Augustus_model.g6471.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_4-snap.2034-T1
Valid prediction for Augustus_model.g6474.t1
Valid prediction for GlimmerHMM_glimmerT_9969-T1
Valid prediction for Augustus_model.g6467.t1
Valid prediction for GlimmerHMM_glimmerT_9961-T1
Valid prediction for snap_scaffold_4-snap.2044-T1
Valid prediction for snap_scaffold_4-snap.2055-T1
Valid prediction for Augustus_model.g6477.t1
Valid prediction for GlimmerHMM_glimmerT_9951-T1
Valid prediction for snap_scaffold_4-snap.2036-T1
Valid prediction for snap_scaffold_4-snap.2051-T1
Valid prediction for snap_scaffold_4-snap.2043-T1
Valid prediction for snap_scaffold_4-snap.2054-T1
Valid prediction for GlimmerHMM_glimmerT_9968-T1
Valid prediction for GlimmerHMM_glimmerT_9960-T1
Valid prediction for Augustus_model.g6475.t1
Valid prediction for snap_scaffold_4-snap.2045-T1
Valid prediction for GlimmerHMM_glimmerT_9964-T1
Valid prediction for Augustus_model.g6476.t1
Valid prediction for snap_scaffold_4-snap.2032-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g6472.t1
Valid prediction for snap_scaffold_4-snap.2057-T1
Valid prediction for snap_scaffold_4-snap.2037-T1
Valid prediction for snap_scaffold_4-snap.2035-T1
Valid prediction for snap_scaffold_4-snap.2049-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_9962-T1
Valid prediction for GlimmerHMM_glimmerT_9966-T1
Valid prediction for GlimmerHMM_glimmerT_9958-T1
Valid prediction for snap_scaffold_4-snap.2046-T1
Valid prediction for GlimmerHMM_glimmerT_9959-T1
Valid prediction for snap_scaffold_4-snap.2041-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11280, rend_intergenic: 7519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23098, rend_intergenic: 18883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54667, rend_intergenic: 48355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73147, rend_intergenic: 59537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92117, rend_intergenic: 79278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93716, rend_intergenic: 93654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96862, rend_intergenic: 94484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97572, rend_intergenic: 97201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102712, rend_intergenic: 97773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123602, rend_intergenic: 116132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 125866
-exon list size: 242


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.5    
2.9    
3.3    
3.7    
4.1    
4.5    
4.9    
5.3    
5.7    
6.1    
6.6    
7.0    
7.4    
7.8    
8.2    
8.6    
9.0    
9.4    
9.8    
10.2    
10.7    
11.1    
11.5    
11.9    
12.3    
12.7    
13.1    
13.5    
13.9    
14.3    
14.8    
15.2    
15.6    
16.0    
16.4    
16.8    
17.2    
17.6    
18.0    
18.4    
18.9    
19.3    
19.7    
20.1    
20.5    
20.9    
21.3    
21.7    
22.1    
22.5    
23.0    
23.4    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.6    
27.0    
27.5    
27.9    
28.3    
28.7    
29.1    
29.5    
29.9    
30.3    
30.7    
31.1    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.7    
36.1    
36.5    
36.9    
37.3    
37.7    
38.1    
38.5    
38.9    
39.3    
39.8    
40.2    
40.6    
41.0    
41.4    
41.8    
42.2    
42.6    
43.0    
43.4    
43.9    
44.3    
44.7    
45.1    
45.5    
45.9    
46.3    
46.7    
47.1    
47.5    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.5    
52.9    
53.3    
53.7    
54.1    
54.5    
54.9    
55.3    
55.7    
56.1    
56.6    
57.0    
57.4    
57.8    
58.2    
58.6    
59.0    
59.4    
59.8    
60.2    
60.7    
61.1    
61.5    
61.9    
62.3    
62.7    
63.1    
63.5    
63.9    
64.3    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.9    
69.3    
69.7    
70.1    
70.5    
70.9    
71.3    
71.7    
72.1    
72.5    
73.0    
73.4    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.6    
77.0    
77.5    
77.9    
78.3    
78.7    
79.1    
79.5    
79.9    
80.3    
80.7    
81.1    
81.6    
82.0    
82.4    
82.8    
83.2    
83.6    
84.0    
84.4    
84.8    
85.2    
85.7    
86.1    
86.5    
86.9    
87.3    
87.7    
88.1    
88.5    
88.9    
89.3    
89.8    
90.2    
90.6    
91.0    
91.4    
91.8    
92.2    
92.6    
93.0    
93.4    
93.9    
94.3    
94.7    
95.1    
95.5    
95.9    
96.3    
96.7    
97.1    
97.5    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 11280, rend_intergenic: 7519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23098, rend_intergenic: 18883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54667, rend_intergenic: 48355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73147, rend_intergenic: 59537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92117, rend_intergenic: 79278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93716, rend_intergenic: 93654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96862, rend_intergenic: 94484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97572, rend_intergenic: 97201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102712, rend_intergenic: 97773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123602, rend_intergenic: 116132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support