-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_4/scaffold_4_9064316-9246823

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_4-snap.1935-T1
Valid prediction for snap_scaffold_4-snap.1921-T1
Valid prediction for GlimmerHMM_glimmerT_9889-T1
Valid prediction for snap_scaffold_4-snap.1934-T1
Valid prediction for snap_scaffold_4-snap.1922-T1
Valid prediction for GlimmerHMM_glimmerT_9883-T1
Valid prediction for snap_scaffold_4-snap.1931-T1
Valid prediction for snap_scaffold_4-snap.1937-T1
Valid prediction for GlimmerHMM_glimmerT_9879-T1
Valid prediction for Augustus_model.g6424.t1
Valid prediction for GlimmerHMM_glimmerT_9872-T1
Valid prediction for Augustus_model.g6416.t1
Valid prediction for GlimmerHMM_glimmerT_9870-T1
Valid prediction for snap_scaffold_4-snap.1925-T1
Valid prediction for snap_scaffold_4-snap.1914-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_9892-T1
Valid prediction for GlimmerHMM_glimmerT_9869-T1
Valid prediction for snap_scaffold_4-snap.1910-T1
Valid prediction for Augustus_model.g6418.t1
Valid prediction for snap_scaffold_4-snap.1907-T1
Valid prediction for Augustus_model.g6420.t1
Valid prediction for GlimmerHMM_glimmerT_9877-T1
Valid prediction for Augustus_model.g6419.t1
Valid prediction for Augustus_model.g6423.t1
Valid prediction for snap_scaffold_4-snap.1933-T1
Valid prediction for snap_scaffold_4-snap.1911-T1
Valid prediction for Augustus_model.g6417.t1
Valid prediction for snap_scaffold_4-snap.1929-T1
Valid prediction for snap_scaffold_4-snap.1936-T1
Valid prediction for GlimmerHMM_glimmerT_9893-T1
Valid prediction for snap_scaffold_4-snap.1923-T1
Valid prediction for GlimmerHMM_glimmerT_9886-T1
Valid prediction for snap_scaffold_4-snap.1908-T1
Valid prediction for GlimmerHMM_glimmerT_9876-T1
Valid prediction for GlimmerHMM_glimmerT_9884-T1
Valid prediction for GlimmerHMM_glimmerT_9874-T1
Valid prediction for snap_scaffold_4-snap.1939-T1
Valid prediction for snap_scaffold_4-snap.1913-T1
Valid prediction for snap_scaffold_4-snap.1917-T1
Valid prediction for snap_scaffold_4-snap.1928-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_4-snap.1919-T1
Valid prediction for GlimmerHMM_glimmerT_9873-T1
Valid prediction for GlimmerHMM_glimmerT_9890-T1
Valid prediction for GlimmerHMM_glimmerT_9894-T1
Valid prediction for snap_scaffold_4-snap.1912-T1
Valid prediction for GlimmerHMM_glimmerT_9882-T1
Valid prediction for Augustus_model.g6421.t1
Valid prediction for Augustus_model.g6415.t1
Valid prediction for GlimmerHMM_glimmerT_9888-T1
Valid prediction for GlimmerHMM_glimmerT_9891-T1
Valid prediction for Augustus_model.g6422.t1
Valid prediction for snap_scaffold_4-snap.1926-T1
Valid prediction for GlimmerHMM_glimmerT_9875-T1
Valid prediction for snap_scaffold_4-snap.1932-T1
Valid prediction for GlimmerHMM_glimmerT_9871-T1
Valid prediction for GlimmerHMM_glimmerT_9868-T1
Valid prediction for GlimmerHMM_glimmerT_9880-T1
Valid prediction for GlimmerHMM_glimmerT_9885-T1
Valid prediction for snap_scaffold_4-snap.1938-T1
Valid prediction for snap_scaffold_4-snap.1909-T1
Valid prediction for snap_scaffold_4-snap.1927-T1
Valid prediction for snap_scaffold_4-snap.1924-T1
Valid prediction for GlimmerHMM_glimmerT_9878-T1
Valid prediction for snap_scaffold_4-snap.1906-T1
Valid prediction for snap_scaffold_4-snap.1918-T1
Valid prediction for snap_scaffold_4-snap.1920-T1
Valid prediction for snap_scaffold_4-snap.1930-T1
Valid prediction for GlimmerHMM_glimmerT_9881-T1
Valid prediction for GlimmerHMM_glimmerT_9887-T1
Valid prediction for snap_scaffold_4-snap.1915-T1
Valid prediction for snap_scaffold_4-snap.1916-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22795, rend_intergenic: 21035  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43901, rend_intergenic: 41367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53769, rend_intergenic: 50725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73843, rend_intergenic: 54052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81298, rend_intergenic: 79038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95894, rend_intergenic: 92065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145300, rend_intergenic: 142082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151915, rend_intergenic: 151818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162601, rend_intergenic: 152452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181231, rend_intergenic: 174940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 182508
-exon list size: 244


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.3    
3.7    
4.1    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.8    
10.2    
10.6    
11.0    
11.4    
11.8    
12.2    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.9    
16.3    
16.7    
17.1    
17.5    
17.9    
18.3    
18.7    
19.1    
19.5    
19.9    
20.3    
20.7    
21.1    
21.5    
22.0    
22.4    
22.8    
23.2    
23.6    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.4    
26.8    
27.2    
27.6    
28.0    
28.5    
28.9    
29.3    
29.7    
30.1    
30.5    
30.9    
31.3    
31.7    
32.1    
32.5    
32.9    
33.3    
33.7    
34.1    
34.6    
35.0    
35.4    
35.8    
36.2    
36.6    
37.0    
37.4    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.7    
41.1    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
43.9    
44.3    
44.7    
45.1    
45.5    
45.9    
46.3    
46.7    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.3    
53.7    
54.1    
54.5    
54.9    
55.3    
55.7    
56.1    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.9    
59.3    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.6    
63.0    
63.4    
63.8    
64.2    
64.6    
65.0    
65.4    
65.9    
66.3    
66.7    
67.1    
67.5    
67.9    
68.3    
68.7    
69.1    
69.5    
69.9    
70.3    
70.7    
71.1    
71.5    
72.0    
72.4    
72.8    
73.2    
73.6    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.4    
76.8    
77.2    
77.6    
78.0    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.9    
81.3    
81.7    
82.1    
82.5    
82.9    
83.3    
83.7    
84.1    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.8    
88.2    
88.6    
89.0    
89.4    
89.8    
90.2    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
95.9    
96.3    
96.7    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 22795, rend_intergenic: 21035  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43901, rend_intergenic: 41367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53769, rend_intergenic: 50725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73843, rend_intergenic: 54052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81298, rend_intergenic: 79038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95894, rend_intergenic: 92065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145300, rend_intergenic: 142082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151915, rend_intergenic: 151818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162601, rend_intergenic: 152452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181231, rend_intergenic: 174940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support