-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_4/scaffold_4_7239427-7471160

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_9636-T1
Valid prediction for GlimmerHMM_glimmerT_9634-T1
Valid prediction for snap_scaffold_4-snap.1582-T1
Valid prediction for Augustus_model.g6263.t1
Valid prediction for GlimmerHMM_glimmerT_9649-T1
Valid prediction for Augustus_model.g6250.t1
Valid prediction for GlimmerHMM_glimmerT_9648-T1
Valid prediction for snap_scaffold_4-snap.1569-T1
Valid prediction for snap_scaffold_4-snap.1553-T1
Valid prediction for HiQ_model.g6264.t1
Valid prediction for snap_scaffold_4-snap.1575-T1
Valid prediction for CodingQuarry_transcript_49055-T1
Valid prediction for GlimmerHMM_glimmerT_9637-T1
Couldn't classify 25997, 26135
Sorry, prediction pasa_asmbl_41480.p3 fails validation.
(CCA)	 CA	25997-26135	GT	GAG
(TGC)	 AG	27204-27306	GT	AGG
(GTC)	 AG	27790-27862	GC	GAG
-recovered pasa_asmbl_41480.p3, terminal, 27790, 27862
-recovered pasa_asmbl_41480.p3, internal, 27204, 27306
-recovered pasa_asmbl_41480.p3, internal, 27790, 27862
Valid prediction for Augustus_model.g6269.t1
Valid prediction for snap_scaffold_4-snap.1566-T1
Valid prediction for GlimmerHMM_glimmerT_9650-T1
Valid prediction for pasa_asmbl_41496.p1
Couldn't classify 124995, 125613
Sorry, prediction pasa_asmbl_41493.p1 fails validation.
(GTC)	 GA	124995-125613	GT	AGG
(AGA)	 AG	125738-125871	GT	AGG
(GAG)	 AG	125982-126110	GT	AGG
(GAA)	 AG	126434-126466	TC	AGT
-recovered pasa_asmbl_41493.p1, terminal, 126434, 126466
-recovered pasa_asmbl_41493.p1, internal, 125738, 125871
-recovered pasa_asmbl_41493.p1, internal, 125982, 126110
Valid prediction for GlimmerHMM_glimmerT_9658-T1
Valid prediction for GlimmerHMM_glimmerT_9633-T1
Couldn't classify 20441, 20497
Sorry, prediction pasa_asmbl_41482.p1 fails validation.
(GAA)	 AA	20441-20497	GT	AGG
(CTG)	 AG	20849-20986	GT	TGG
(GAC)	 AG	21976-22052	GT	AAG
(GCT)	 AG	22263-22496	GT	GGG
(GTC)	 AG	23112-23607	TC	AGT
-recovered pasa_asmbl_41482.p1, terminal, 23112, 23607
-recovered pasa_asmbl_41482.p1, internal, 20849, 20986
-recovered pasa_asmbl_41482.p1, internal, 21976, 22052
-recovered pasa_asmbl_41482.p1, internal, 22263, 22496
Valid prediction for pasa_asmbl_41490.p1
Couldn't classify 19776, 19906
Sorry, prediction pasa_asmbl_41479.p1 fails validation.
(ATG)	 GT	17532-17648	GT	AGG
(AAA)	 AG	18139-18255	GT	AGG
(GTG)	 AG	18505-18605	GT	CCG
(CAT)	 AG	19030-19138	GT	AGG
(GCA)	 AG	19450-19528	GT	GAG
(AGG)	 AG	19776-19906	GT	CTG
-recovered pasa_asmbl_41479.p1, initial, 17532, 17648
-recovered pasa_asmbl_41479.p1, terminal, 19450, 19528
-recovered pasa_asmbl_41479.p1, internal, 18139, 18255
-recovered pasa_asmbl_41479.p1, internal, 18505, 18605
-recovered pasa_asmbl_41479.p1, internal, 19030, 19138
-recovered pasa_asmbl_41479.p1, internal, 19450, 19528
-recovered pasa_asmbl_41479.p1, internal, 19776, 19906
Couldn't classify 117623, 117728
Couldn't classify 119613, 119643
Sorry, prediction pasa_asmbl_41491.p1 fails validation.
(GAT)	 AT	117623-117728	GT	CGG
(AGC)	 AG	117879-117996	GT	AGG
(AAG)	 AG	118817-118933	GT	AGG
(GTG)	 AG	119085-119193	GT	CGG
(GTG)	 AG	119338-119453	GT	AGG
(GGG)	 AG	119613-119643	GG	CAG
-recovered pasa_asmbl_41491.p1, internal, 117879, 117996
-recovered pasa_asmbl_41491.p1, internal, 118817, 118933
-recovered pasa_asmbl_41491.p1, internal, 119085, 119193
-recovered pasa_asmbl_41491.p1, internal, 119338, 119453
Valid prediction for GlimmerHMM_glimmerT_9664-T1
Valid prediction for snap_scaffold_4-snap.1548-T1
Couldn't classify 119941, 120011
Couldn't classify 120794, 120874
Sorry, prediction pasa_asmbl_42279.p2 fails validation.
(GCC)	 CA	119941-120011	GT	AGG
(CTC)	 AG	120433-120592	GT	AAG
(GCA)	 AG	120794-120874	AA	ACA
-recovered pasa_asmbl_42279.p2, internal, 120433, 120592
Valid prediction for GlimmerHMM_glimmerT_9643-T1
Valid prediction for snap_scaffold_4-snap.1573-T1
Valid prediction for GlimmerHMM_glimmerT_9663-T1
Valid prediction for GlimmerHMM_glimmerT_9654-T1
Valid prediction for GlimmerHMM_glimmerT_9632-T1
Valid prediction for Augustus_model.g6249.t1
Valid prediction for snap_scaffold_4-snap.1568-T1
Valid prediction for snap_scaffold_4-snap.1579-T1
Valid prediction for snap_scaffold_4-snap.1567-T1
Couldn't classify 26135, 26135
Sorry, prediction CodingQuarry_transcript_49050-T1 fails validation.
(AGT)	 TG	26135-26135	GT	GAG
(TGC)	 AG	27204-27306	GT	AGG
(GTC)	 AG	27790-27862	GC	GAG
-recovered CodingQuarry_transcript_49050-T1, terminal, 27790, 27862
-recovered CodingQuarry_transcript_49050-T1, internal, 27204, 27306
-recovered CodingQuarry_transcript_49050-T1, internal, 27790, 27862
Valid prediction for Augustus_model.g6262.t1
Valid prediction for Augustus_model.g6252.t1
Valid prediction for snap_scaffold_4-snap.1555-T1
Valid prediction for snap_scaffold_4-snap.1558-T1
Valid prediction for Augustus_model.g6248.t1
Valid prediction for GlimmerHMM_glimmerT_9639-T1
Valid prediction for GlimmerHMM_glimmerT_9647-T1
Valid prediction for snap_scaffold_4-snap.1572-T1
Valid prediction for snap_scaffold_4-snap.1542-T1
Valid prediction for HiQ_model.g6267.t1
Valid prediction for CodingQuarry_transcript_49054-T1
Valid prediction for snap_scaffold_4-snap.1546-T1
Couldn't classify 150273, 150300
Sorry, prediction pasa_asmbl_41499.p1 fails validation.
(CAG)	 GA	150273-150300	GT	CAG
(GGT)	 AG	150523-150614	GT	AGG
(ATA)	 AG	151751-151862	GT	AGG
(GTG)	 AG	152027-152091	GT	TCG
(ATA)	 AG	152774-152800	GT	AGG
(CTT)	 AG	153012-153107	GT	AGG
(GCT)	 AG	153252-153304	GT	TCG
(GGT)	 AG	153487-153597	GT	TTG
(GTA)	 AG	153960-154125	AC	GAA
-recovered pasa_asmbl_41499.p1, terminal, 153960, 154125
-recovered pasa_asmbl_41499.p1, internal, 150523, 150614
-recovered pasa_asmbl_41499.p1, internal, 151751, 151862
-recovered pasa_asmbl_41499.p1, internal, 152027, 152091
-recovered pasa_asmbl_41499.p1, internal, 152774, 152800
-recovered pasa_asmbl_41499.p1, internal, 153012, 153107
-recovered pasa_asmbl_41499.p1, internal, 153252, 153304
-recovered pasa_asmbl_41499.p1, internal, 153487, 153597
Valid prediction for CodingQuarry_transcript_49057-T1
Valid prediction for GlimmerHMM_glimmerT_9655-T1
Valid prediction for snap_scaffold_4-snap.1550-T1
Valid prediction for HiQ_model.g6261.t1
Couldn't classify 67084, 67152
Sorry, prediction pasa_asmbl_41487.p1 fails validation.
(AAA)	 AA	67084-67152	GT	AGG
(ACT)	 AG	67792-67927	GT	CCG
(GTT)	 AG	68178-68863	CC	GAC
-recovered pasa_asmbl_41487.p1, terminal, 68178, 68863
-recovered pasa_asmbl_41487.p1, internal, 67792, 67927
Valid prediction for Augustus_model.g6255.t1
Couldn't classify 123315, 123398
Couldn't classify 124108, 124229
Sorry, prediction pasa_asmbl_41492.p1 fails validation.
(CGC)	 TC	123315-123398	GT	AGG
(GTT)	 AG	123806-123965	GT	AGG
(ACC)	 AG	124108-124229	GG	GAG
-recovered pasa_asmbl_41492.p1, internal, 123806, 123965
Valid prediction for snap_scaffold_4-snap.1544-T1
Valid prediction for Augustus_model.g6251.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_9660-T1
Valid prediction for snap_scaffold_4-snap.1577-T1
Valid prediction for GlimmerHMM_glimmerT_9651-T1
Valid prediction for Augustus_model.g6270.t1
Valid prediction for pasa_asmbl_42709.p1
Valid prediction for snap_scaffold_4-snap.1574-T1
Valid prediction for GlimmerHMM_glimmerT_9652-T1
Valid prediction for GlimmerHMM_glimmerT_9641-T1
Valid prediction for pasa_asmbl_42712.p1
Valid prediction for snap_scaffold_4-snap.1560-T1
Valid prediction for snap_scaffold_4-snap.1564-T1
Valid prediction for HiQ_model.g6256.t1
Valid prediction for Augustus_model.g6266.t1
Couldn't classify 151490, 151793
Sorry, prediction pasa_asmbl_42705.p1 fails validation.
(CCA)	 AG	151490-151793	GT	GGG
(ATA)	 AG	151939-152003	GT	GAG
(GAG)	 AG	152131-152218	GT	AGG
(GTC)	 AG	152349-152466	GT	AGG
(ATA)	 AG	152547-152670	GT	AGG
(GTG)	 AG	152988-153124	GT	AGG
(AGA)	 AG	153397-153652	GT	CTG
(GAA)	 AG	153739-153981	GT	AGG
(GTT)	 AG	154070-154246	GT	ATG
(CTT)	 AG	154438-154583	GT	AAG
(GAA)	 AG	154969-155059	GT	AGG
(GCT)	 AG	155209-155598	GT	AGG
(GGC)	 AG	155863-155989	GT	CGG
(GTG)	 AG	156127-156245	GT	AGG
(GCT)	 AG	156362-156558	GT	AAG
(GAA)	 AG	156713-156896	GT	AGG
(GTT)	 AG	157067-157232	GT	ACG
(AGG)	 AG	157423-157547	GT	AGG
(GGA)	 AG	157653-157961	GT	AGG
(GAT)	 AG	158271-158474	GT	AGG
(AAT)	 AG	158575-158700	GT	ATG
(GCG)	 AG	159090-159260	GT	GAG
(GTG)	 AG	159407-159511	GT	AGG
(ACT)	 AG	159616-159711	GT	CTG
(GAG)	 AG	159909-160040	GT	AGG
(GCT)	 AG	160163-160180	AC	AGA
-recovered pasa_asmbl_42705.p1, terminal, 160163, 160180
-recovered pasa_asmbl_42705.p1, internal, 151490, 151793
-recovered pasa_asmbl_42705.p1, internal, 151939, 152003
-recovered pasa_asmbl_42705.p1, internal, 152131, 152218
-recovered pasa_asmbl_42705.p1, internal, 152349, 152466
-recovered pasa_asmbl_42705.p1, internal, 152547, 152670
-recovered pasa_asmbl_42705.p1, internal, 152988, 153124
-recovered pasa_asmbl_42705.p1, internal, 153397, 153652
-recovered pasa_asmbl_42705.p1, internal, 153739, 153981
-recovered pasa_asmbl_42705.p1, internal, 154070, 154246
-recovered pasa_asmbl_42705.p1, internal, 154438, 154583
-recovered pasa_asmbl_42705.p1, internal, 154969, 155059
-recovered pasa_asmbl_42705.p1, internal, 155209, 155598
-recovered pasa_asmbl_42705.p1, internal, 155863, 155989
-recovered pasa_asmbl_42705.p1, internal, 156127, 156245
-recovered pasa_asmbl_42705.p1, internal, 156362, 156558
-recovered pasa_asmbl_42705.p1, internal, 156713, 156896
-recovered pasa_asmbl_42705.p1, internal, 157067, 157232
-recovered pasa_asmbl_42705.p1, internal, 157423, 157547
-recovered pasa_asmbl_42705.p1, internal, 157653, 157961
-recovered pasa_asmbl_42705.p1, internal, 158271, 158474
-recovered pasa_asmbl_42705.p1, internal, 158575, 158700
-recovered pasa_asmbl_42705.p1, internal, 159090, 159260
-recovered pasa_asmbl_42705.p1, internal, 159407, 159511
-recovered pasa_asmbl_42705.p1, internal, 159616, 159711
-recovered pasa_asmbl_42705.p1, internal, 159909, 160040
Valid prediction for GlimmerHMM_glimmerT_9640-T1
Valid prediction for Augustus_model.g6265.t1
Valid prediction for snap_scaffold_4-snap.1543-T1
Valid prediction for snap_scaffold_4-snap.1561-T1
Valid prediction for snap_scaffold_4-snap.1559-T1
Valid prediction for GlimmerHMM_glimmerT_9657-T1
Valid prediction for GlimmerHMM_glimmerT_9645-T1
Valid prediction for CodingQuarry_transcript_49053-T1
Valid prediction for snap_scaffold_4-snap.1552-T1
Valid prediction for snap_scaffold_4-snap.1563-T1
Valid prediction for GlimmerHMM_glimmerT_9665-T1
Couldn't classify 72674, 74269
Sorry, prediction pasa_asmbl_42719.p1 fails validation.
(CTC)	 TC	72674-74269	CT	GCC
Valid prediction for GlimmerHMM_glimmerT_9642-T1
Valid prediction for GlimmerHMM_glimmerT_9656-T1
Valid prediction for snap_scaffold_4-snap.1578-T1
Valid prediction for GlimmerHMM_glimmerT_9638-T1
Valid prediction for snap_scaffold_4-snap.1551-T1
Valid prediction for GlimmerHMM_glimmerT_9661-T1
Valid prediction for snap_scaffold_4-snap.1581-T1
Valid prediction for Augustus_model.g6258.t1
Valid prediction for snap_scaffold_4-snap.1565-T1
Valid prediction for HiQ_model.g6260.t1
Valid prediction for GlimmerHMM_glimmerT_9635-T1
Valid prediction for snap_scaffold_4-snap.1549-T1
Valid prediction for Augustus_model.g6268.t1
Valid prediction for GlimmerHMM_glimmerT_9646-T1
Couldn't classify 88216, 88350
Couldn't classify 90865, 90909
Sorry, prediction pasa_asmbl_42715.p1 fails validation.
(GTA)	 GG	88216-88350	GT	AGG
(ATG)	 AG	88544-88636	GT	AGG
(CGC)	 AG	89967-90113	GT	GCG
(GTG)	 AG	90541-90735	GT	AGG
(TGG)	 AG	90865-90909	CA	GAC
-recovered pasa_asmbl_42715.p1, initial, 88544, 88636
-recovered pasa_asmbl_42715.p1, internal, 88544, 88636
-recovered pasa_asmbl_42715.p1, internal, 89967, 90113
-recovered pasa_asmbl_42715.p1, internal, 90541, 90735
Valid prediction for GlimmerHMM_glimmerT_9662-T1
Valid prediction for snap_scaffold_4-snap.1556-T1
Valid prediction for Augustus_model.g6253.t1
Valid prediction for GlimmerHMM_glimmerT_9644-T1
Valid prediction for HiQ_model.g6259.t1
Valid prediction for Augustus_model.g6257.t1
Valid prediction for snap_scaffold_4-snap.1554-T1
Valid prediction for snap_scaffold_4-snap.1547-T1
Valid prediction for GlimmerHMM_glimmerT_9653-T1
Valid prediction for snap_scaffold_4-snap.1562-T1
Valid prediction for CodingQuarry_transcript_49052-T1
Valid prediction for snap_scaffold_4-snap.1545-T1
Valid prediction for snap_scaffold_4-snap.1557-T1
Valid prediction for snap_scaffold_4-snap.1571-T1
Valid prediction for Augustus_model.g6254.t1
Valid prediction for snap_scaffold_4-snap.1576-T1
Valid prediction for snap_scaffold_4-snap.1580-T1
Valid prediction for GlimmerHMM_glimmerT_9659-T1
Valid prediction for CodingQuarry_transcript_49056-T1
Couldn't classify 74312, 74800
Sorry, prediction pasa_asmbl_42717.p1 fails validation.
(GAG)	 CT	74312-74800	AA	GAA
Valid prediction for snap_scaffold_4-snap.1570-T1
Couldn't classify 151150, 151254
Sorry, prediction pasa_asmbl_42706.p1 fails validation.
(ATG)	 CC	147694-147900	GT	AGG
(GTT)	 AG	148094-148237	GT	ACG
(ACC)	 AG	148351-148507	GT	TGG
(ATA)	 AG	148615-148642	GT	ACG
(TGG)	 AG	148824-148938	GT	AGG
(GGT)	 AG	149487-149579	GT	TTG
(GGT)	 AG	149680-149743	GT	CTG
(ACC)	 AG	149839-149937	GT	TGG
(AAA)	 AG	150066-150169	GT	ATG
(GAT)	 AG	150251-150389	GT	GGG
(TGG)	 AG	150494-150612	GT	AGG
(GTG)	 AG	150803-150952	GT	ACG
(TAC)	 AG	151150-151254	GG	AGG
-recovered pasa_asmbl_42706.p1, initial, 147694, 147900
-recovered pasa_asmbl_42706.p1, internal, 148094, 148237
-recovered pasa_asmbl_42706.p1, internal, 148351, 148507
-recovered pasa_asmbl_42706.p1, internal, 148615, 148642
-recovered pasa_asmbl_42706.p1, internal, 148824, 148938
-recovered pasa_asmbl_42706.p1, internal, 149487, 149579
-recovered pasa_asmbl_42706.p1, internal, 149680, 149743
-recovered pasa_asmbl_42706.p1, internal, 149839, 149937
-recovered pasa_asmbl_42706.p1, internal, 150066, 150169
-recovered pasa_asmbl_42706.p1, internal, 150251, 150389
-recovered pasa_asmbl_42706.p1, internal, 150494, 150612
-recovered pasa_asmbl_42706.p1, internal, 150803, 150952

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9067, rend_intergenic: 5071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14727, rend_intergenic: 13142  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16155, rend_intergenic: 16017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22346, rend_intergenic: 17305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27862, rend_intergenic: 24490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141803, rend_intergenic: 140181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145778, rend_intergenic: 142434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 231734
-exon list size: 439


building trellis

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48.5    
48.8    
49.0    
49.2    
49.4    
49.7    
49.9    
50.1    
50.3    
50.6    
50.8    
51.0    
51.2    
51.5    
51.7    
51.9    
52.2    
52.4    
52.6    
52.8    
53.1    
53.3    
53.5    
53.7    
54.0    
54.2    
54.4    
54.6    
54.9    
55.1    
55.3    
55.6    
55.8    
56.0    
56.2    
56.5    
56.7    
56.9    
57.1    
57.4    
57.6    
57.8    
58.0    
58.3    
58.5    
58.7    
59.0    
59.2    
59.4    
59.6    
59.9    
60.1    
60.3    
60.5    
60.8    
61.0    
61.2    
61.5    
61.7    
61.9    
62.1    
62.4    
62.6    
62.8    
63.0    
63.3    
63.5    
63.7    
63.9    
64.2    
64.4    
64.6    
64.9    
65.1    
65.3    
65.5    
65.8    
66.0    
66.2    
66.4    
66.7    
66.9    
67.1    
67.3    
67.6    
67.8    
68.0    
68.3    
68.5    
68.7    
68.9    
69.2    
69.4    
69.6    
69.8    
70.1    
70.3    
70.5    
70.7    
71.0    
71.2    
71.4    
71.7    
71.9    
72.1    
72.3    
72.6    
72.8    
73.0    
73.2    
73.5    
73.7    
73.9    
74.1    
74.4    
74.6    
74.8    
75.1    
75.3    
75.5    
75.7    
76.0    
76.2    
76.4    
76.6    
76.9    
77.1    
77.3    
77.6    
77.8    
78.0    
78.2    
78.5    
78.7    
78.9    
79.1    
79.4    
79.6    
79.8    
80.0    
80.3    
80.5    
80.7    
81.0    
81.2    
81.4    
81.6    
81.9    
82.1    
82.3    
82.5    
82.8    
83.0    
83.2    
83.4    
83.7    
83.9    
84.1    
84.4    
84.6    
84.8    
85.0    
85.3    
85.5    
85.7    
85.9    
86.2    
86.4    
86.6    
86.8    
87.1    
87.3    
87.5    
87.8    
88.0    
88.2    
88.4    
88.7    
88.9    
89.1    
89.3    
89.6    
89.8    
90.0    
90.2    
90.5    
90.7    
90.9    
91.2    
91.4    
91.6    
91.8    
92.1    
92.3    
92.5    
92.7    
93.0    
93.2    
93.4    
93.7    
93.9    
94.1    
94.3    
94.6    
94.8    
95.0    
95.2    
95.5    
95.7    
95.9    
96.1    
96.4    
96.6    
96.8    
97.1    
97.3    
97.5    
97.7    
98.0    
98.2    
98.4    
98.6    
98.9    
99.1    
99.3    
99.5    
99.8    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 9067, rend_intergenic: 5071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14727, rend_intergenic: 13142  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16155, rend_intergenic: 16017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22346, rend_intergenic: 17305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27862, rend_intergenic: 24490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141803, rend_intergenic: 140181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145778, rend_intergenic: 142434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 33 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11605
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11178
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 214220 - 231734
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 215238 - 231734
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support