-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_4/scaffold_4_11908433-11987966

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_4-snap.2550-T1
Valid prediction for snap_scaffold_4-snap.2535-T1
Valid prediction for snap_scaffold_4-snap.2554-T1
Valid prediction for snap_scaffold_4-snap.2549-T1
Valid prediction for snap_scaffold_4-snap.2534-T1
Valid prediction for snap_scaffold_4-snap.2543-T1
Valid prediction for GlimmerHMM_glimmerT_10309-T1
Valid prediction for snap_scaffold_4-snap.2547-T1
Valid prediction for GlimmerHMM_glimmerT_10305-T1
Valid prediction for Augustus_model.g6693.t1
Valid prediction for snap_scaffold_4-snap.2537-T1
Valid prediction for snap_scaffold_4-snap.2552-T1
Valid prediction for GlimmerHMM_glimmerT_10303-T1
Valid prediction for snap_scaffold_4-snap.2536-T1
Valid prediction for snap_scaffold_4-snap.2532-T1
Valid prediction for GlimmerHMM_glimmerT_10304-T1
Valid prediction for Augustus_model.g6695.t1
Valid prediction for snap_scaffold_4-snap.2541-T1
Valid prediction for GlimmerHMM_glimmerT_10307-T1
Valid prediction for snap_scaffold_4-snap.2545-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_4-snap.2555-T1
Valid prediction for snap_scaffold_4-snap.2548-T1
Valid prediction for Augustus_model.g6694.t1
Valid prediction for snap_scaffold_4-snap.2546-T1
Valid prediction for snap_scaffold_4-snap.2553-T1
Valid prediction for GlimmerHMM_glimmerT_10310-T1
Valid prediction for snap_scaffold_4-snap.2540-T1
Valid prediction for snap_scaffold_4-snap.2542-T1
Valid prediction for snap_scaffold_4-snap.2539-T1
Valid prediction for snap_scaffold_4-snap.2538-T1
Valid prediction for snap_scaffold_4-snap.2544-T1
Valid prediction for GlimmerHMM_glimmerT_10302-T1
Valid prediction for HiQ_model.g6696.t1
Valid prediction for snap_scaffold_4-snap.2551-T1
Valid prediction for GlimmerHMM_glimmerT_10306-T1
Valid prediction for GlimmerHMM_glimmerT_10308-T1
Valid prediction for snap_scaffold_4-snap.2533-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11188, rend_intergenic: 7309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20116, rend_intergenic: 17233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27737, rend_intergenic: 25376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45407, rend_intergenic: 39745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48167, rend_intergenic: 48093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50087, rend_intergenic: 48459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56783, rend_intergenic: 54309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67090, rend_intergenic: 63586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 79534
-exon list size: 119


building trellis

0.8    
1.7    
2.5    
3.3    
4.1    
5.0    
5.8    
6.6    
7.4    
8.3    
9.1    
9.9    
10.7    
11.6    
12.4    
13.2    
14.0    
14.9    
15.7    
16.5    
17.4    
18.2    
19.0    
19.8    
20.7    
21.5    
22.3    
23.1    
24.0    
24.8    
25.6    
26.4    
27.3    
28.1    
28.9    
29.8    
30.6    
31.4    
32.2    
33.1    
33.9    
34.7    
35.5    
36.4    
37.2    
38.0    
38.8    
39.7    
40.5    
41.3    
42.1    
43.0    
43.8    
44.6    
45.5    
46.3    
47.1    
47.9    
48.8    
49.6    
50.4    
51.2    
52.1    
52.9    
53.7    
54.5    
55.4    
56.2    
57.0    
57.9    
58.7    
59.5    
60.3    
61.2    
62.0    
62.8    
63.6    
64.5    
65.3    
66.1    
66.9    
67.8    
68.6    
69.4    
70.2    
71.1    
71.9    
72.7    
73.6    
74.4    
75.2    
76.0    
76.9    
77.7    
78.5    
79.3    
80.2    
81.0    
81.8    
82.6    
83.5    
84.3    
85.1    
86.0    
86.8    
87.6    
88.4    
89.3    
90.1    
90.9    
91.7    
92.6    
93.4    
94.2    
95.0    
95.9    
96.7    
97.5    
98.3    
99.2    
-found 19 predictions from path traversal
Error with prediction: snap lend_intergenic: 11188, rend_intergenic: 7309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20116, rend_intergenic: 17233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27737, rend_intergenic: 25376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45407, rend_intergenic: 39745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48167, rend_intergenic: 48093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50087, rend_intergenic: 48459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56783, rend_intergenic: 54309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67090, rend_intergenic: 63586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support