-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_4/scaffold_4_11662361-11911218

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g6690.t1
Valid prediction for Augustus_model.g6689.t1
Valid prediction for GlimmerHMM_glimmerT_10277-T1
Valid prediction for GlimmerHMM_glimmerT_10289-T1
Valid prediction for snap_scaffold_4-snap.2512-T1
Valid prediction for snap_scaffold_4-snap.2515-T1
Valid prediction for snap_scaffold_4-snap.2525-T1
Valid prediction for GlimmerHMM_glimmerT_10285-T1
Valid prediction for snap_scaffold_4-snap.2516-T1
Valid prediction for Augustus_model.g6687.t1
Valid prediction for snap_scaffold_4-snap.2501-T1
Valid prediction for GlimmerHMM_glimmerT_10287-T1
Valid prediction for GlimmerHMM_glimmerT_10293-T1
Valid prediction for GlimmerHMM_glimmerT_10297-T1
Valid prediction for Augustus_model.g6688.t1
Valid prediction for Augustus_model.g6685.t1
Valid prediction for GlimmerHMM_glimmerT_10299-T1
Valid prediction for GlimmerHMM_glimmerT_10290-T1
Valid prediction for GlimmerHMM_glimmerT_10275-T1
Valid prediction for snap_scaffold_4-snap.2524-T1
Valid prediction for snap_scaffold_4-snap.2503-T1
Valid prediction for GlimmerHMM_glimmerT_10288-T1
Valid prediction for snap_scaffold_4-snap.2506-T1
Valid prediction for GlimmerHMM_glimmerT_10286-T1
Valid prediction for GlimmerHMM_glimmerT_10294-T1
Valid prediction for GlimmerHMM_glimmerT_10292-T1
Valid prediction for snap_scaffold_4-snap.2520-T1
Valid prediction for GlimmerHMM_glimmerT_10284-T1
Valid prediction for GlimmerHMM_glimmerT_10278-T1
Valid prediction for snap_scaffold_4-snap.2531-T1
Valid prediction for GlimmerHMM_glimmerT_10283-T1
Valid prediction for GlimmerHMM_glimmerT_10279-T1
Valid prediction for snap_scaffold_4-snap.2505-T1
Valid prediction for snap_scaffold_4-snap.2509-T1
Valid prediction for snap_scaffold_4-snap.2519-T1
Valid prediction for GlimmerHMM_glimmerT_10281-T1
Valid prediction for snap_scaffold_4-snap.2513-T1
Valid prediction for snap_scaffold_4-snap.2521-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g6683.t1
Valid prediction for GlimmerHMM_glimmerT_10280-T1
Valid prediction for snap_scaffold_4-snap.2504-T1
Valid prediction for GlimmerHMM_glimmerT_10282-T1
Valid prediction for snap_scaffold_4-snap.2530-T1
Valid prediction for GlimmerHMM_glimmerT_10274-T1
Valid prediction for snap_scaffold_4-snap.2507-T1
Valid prediction for snap_scaffold_4-snap.2526-T1
Valid prediction for snap_scaffold_4-snap.2508-T1
Valid prediction for GlimmerHMM_glimmerT_10298-T1
Valid prediction for Augustus_model.g6691.t1
Valid prediction for snap_scaffold_4-snap.2529-T1
Valid prediction for GlimmerHMM_glimmerT_10295-T1
Valid prediction for GlimmerHMM_glimmerT_10300-T1
Valid prediction for snap_scaffold_4-snap.2518-T1
Valid prediction for GlimmerHMM_glimmerT_10291-T1
Valid prediction for Augustus_model.g6686.t1
Valid prediction for snap_scaffold_4-snap.2510-T1
Valid prediction for snap_scaffold_4-snap.2511-T1
Valid prediction for snap_scaffold_4-snap.2502-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g6692.t1
Valid prediction for snap_scaffold_4-snap.2523-T1
Valid prediction for snap_scaffold_4-snap.2522-T1
Valid prediction for Augustus_model.g6684.t1
Valid prediction for snap_scaffold_4-snap.2527-T1
Valid prediction for GlimmerHMM_glimmerT_10273-T1
Valid prediction for snap_scaffold_4-snap.2528-T1
Valid prediction for GlimmerHMM_glimmerT_10276-T1
Valid prediction for GlimmerHMM_glimmerT_10296-T1
Valid prediction for snap_scaffold_4-snap.2517-T1
Valid prediction for snap_scaffold_4-snap.2514-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 30856, rend_intergenic: 29267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124936, rend_intergenic: 120236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147092, rend_intergenic: 137651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 248858
-exon list size: 229


building trellis

0.4    
0.9    
1.3    
1.7    
2.2    
2.6    
3.0    
3.5    
3.9    
4.3    
4.8    
5.2    
5.6    
6.1    
6.5    
6.9    
7.4    
7.8    
8.2    
8.7    
9.1    
9.5    
10.0    
10.4    
10.8    
11.3    
11.7    
12.1    
12.6    
13.0    
13.4    
13.9    
14.3    
14.7    
15.2    
15.6    
16.0    
16.5    
16.9    
17.3    
17.7    
18.2    
18.6    
19.0    
19.5    
19.9    
20.3    
20.8    
21.2    
21.6    
22.1    
22.5    
22.9    
23.4    
23.8    
24.2    
24.7    
25.1    
25.5    
26.0    
26.4    
26.8    
27.3    
27.7    
28.1    
28.6    
29.0    
29.4    
29.9    
30.3    
30.7    
31.2    
31.6    
32.0    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.1    
35.5    
35.9    
36.4    
36.8    
37.2    
37.7    
38.1    
38.5    
39.0    
39.4    
39.8    
40.3    
40.7    
41.1    
41.6    
42.0    
42.4    
42.9    
43.3    
43.7    
44.2    
44.6    
45.0    
45.5    
45.9    
46.3    
46.8    
47.2    
47.6    
48.1    
48.5    
48.9    
49.4    
49.8    
50.2    
50.6    
51.1    
51.5    
51.9    
52.4    
52.8    
53.2    
53.7    
54.1    
54.5    
55.0    
55.4    
55.8    
56.3    
56.7    
57.1    
57.6    
58.0    
58.4    
58.9    
59.3    
59.7    
60.2    
60.6    
61.0    
61.5    
61.9    
62.3    
62.8    
63.2    
63.6    
64.1    
64.5    
64.9    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
68.0    
68.4    
68.8    
69.3    
69.7    
70.1    
70.6    
71.0    
71.4    
71.9    
72.3    
72.7    
73.2    
73.6    
74.0    
74.5    
74.9    
75.3    
75.8    
76.2    
76.6    
77.1    
77.5    
77.9    
78.4    
78.8    
79.2    
79.7    
80.1    
80.5    
81.0    
81.4    
81.8    
82.3    
82.7    
83.1    
83.5    
84.0    
84.4    
84.8    
85.3    
85.7    
86.1    
86.6    
87.0    
87.4    
87.9    
88.3    
88.7    
89.2    
89.6    
90.0    
90.5    
90.9    
91.3    
91.8    
92.2    
92.6    
93.1    
93.5    
93.9    
94.4    
94.8    
95.2    
95.7    
96.1    
96.5    
97.0    
97.4    
97.8    
98.3    
98.7    
99.1    
99.6    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 30856, rend_intergenic: 29267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124936, rend_intergenic: 120236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147092, rend_intergenic: 137651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support