-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_4/scaffold_4_11053043-11230514

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_4-snap.2420-T1
Valid prediction for Augustus_model.g6627.t1
Valid prediction for GlimmerHMM_glimmerT_10198-T1
Valid prediction for snap_scaffold_4-snap.2413-T1
Valid prediction for Augustus_model.g6628.t1
Valid prediction for pasa_asmbl_41698.p1
Valid prediction for snap_scaffold_4-snap.2396-T1
Valid prediction for GlimmerHMM_glimmerT_10205-T1
Valid prediction for GlimmerHMM_glimmerT_10197-T1
Valid prediction for CodingQuarry_transcript_49134-T1
Valid prediction for snap_scaffold_4-snap.2399-T1
Valid prediction for snap_scaffold_4-snap.2407-T1
Valid prediction for GlimmerHMM_glimmerT_10202-T1
Valid prediction for snap_scaffold_4-snap.2422-T1
Valid prediction for snap_scaffold_4-snap.2377-T1
Valid prediction for CodingQuarry_transcript_49133-T1
Valid prediction for snap_scaffold_4-snap.2384-T1
Valid prediction for Augustus_model.g6637.t1
Valid prediction for GlimmerHMM_glimmerT_10206-T1
Valid prediction for Augustus_model.g6630.t1
Valid prediction for snap_scaffold_4-snap.2391-T1
Valid prediction for snap_scaffold_4-snap.2402-T1
Valid prediction for snap_scaffold_4-snap.2404-T1
Valid prediction for Augustus_model.g6645.t1
Valid prediction for Augustus_model.g6641.t1
Valid prediction for snap_scaffold_4-snap.2403-T1
Valid prediction for snap_scaffold_4-snap.2406-T1
Valid prediction for snap_scaffold_4-snap.2376-T1
Valid prediction for GlimmerHMM_glimmerT_10196-T1
Valid prediction for GlimmerHMM_glimmerT_10190-T1
Valid prediction for Augustus_model.g6647.t1
Valid prediction for GlimmerHMM_glimmerT_10200-T1
Valid prediction for Augustus_model.g6624.t1
Valid prediction for snap_scaffold_4-snap.2385-T1
Valid prediction for CodingQuarry_transcript_49135-T1
Valid prediction for GlimmerHMM_glimmerT_10207-T1
Valid prediction for GlimmerHMM_glimmerT_10213-T1
Valid prediction for GlimmerHMM_glimmerT_10204-T1
Valid prediction for Augustus_model.g6640.t1
Valid prediction for snap_scaffold_4-snap.2398-T1
Valid prediction for Augustus_model.g6629.t1
Valid prediction for snap_scaffold_4-snap.2379-T1
Valid prediction for Augustus_model.g6648.t1
Valid prediction for snap_scaffold_4-snap.2390-T1
Valid prediction for snap_scaffold_4-snap.2411-T1
Valid prediction for GlimmerHMM_glimmerT_10194-T1
Valid prediction for snap_scaffold_4-snap.2394-T1
Valid prediction for snap_scaffold_4-snap.2386-T1
Valid prediction for snap_scaffold_4-snap.2393-T1
Valid prediction for snap_scaffold_4-snap.2423-T1
Valid prediction for snap_scaffold_4-snap.2417-T1
Valid prediction for Augustus_model.g6622.t1
Valid prediction for snap_scaffold_4-snap.2383-T1
Valid prediction for Augustus_model.g6632.t1
Valid prediction for snap_scaffold_4-snap.2424-T1
Valid prediction for GlimmerHMM_glimmerT_10216-T1
Valid prediction for HiQ_model.g6623.t1
Valid prediction for Augustus_model.g6646.t1
Valid prediction for snap_scaffold_4-snap.2381-T1
Valid prediction for GlimmerHMM_glimmerT_10193-T1
Valid prediction for GlimmerHMM_glimmerT_10195-T1
Valid prediction for snap_scaffold_4-snap.2388-T1
Valid prediction for GlimmerHMM_glimmerT_10208-T1
Valid prediction for GlimmerHMM_glimmerT_10215-T1
Valid prediction for GlimmerHMM_glimmerT_10211-T1
Valid prediction for GlimmerHMM_glimmerT_10191-T1
Valid prediction for GlimmerHMM_glimmerT_10217-T1
Valid prediction for Augustus_model.g6634.t1
Valid prediction for GlimmerHMM_glimmerT_10199-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_4-snap.2387-T1
Valid prediction for Augustus_model.g6631.t1
Valid prediction for snap_scaffold_4-snap.2380-T1
Valid prediction for snap_scaffold_4-snap.2421-T1
Valid prediction for GlimmerHMM_glimmerT_10210-T1
Valid prediction for snap_scaffold_4-snap.2412-T1
Valid prediction for snap_scaffold_4-snap.2405-T1
Valid prediction for Augustus_model.g6635.t1
Valid prediction for GlimmerHMM_glimmerT_10219-T1
Valid prediction for Augustus_model.g6626.t1
Valid prediction for snap_scaffold_4-snap.2408-T1
Valid prediction for snap_scaffold_4-snap.2416-T1
Valid prediction for snap_scaffold_4-snap.2409-T1
Valid prediction for snap_scaffold_4-snap.2382-T1
Valid prediction for GlimmerHMM_glimmerT_10201-T1
Valid prediction for snap_scaffold_4-snap.2397-T1
Valid prediction for Augustus_model.g6636.t1
Valid prediction for GlimmerHMM_glimmerT_10192-T1
Valid prediction for Augustus_model.g6639.t1
Valid prediction for Augustus_model.g6642.t1
Valid prediction for Augustus_model.g6633.t1
Valid prediction for GlimmerHMM_glimmerT_10209-T1
Valid prediction for snap_scaffold_4-snap.2414-T1
Valid prediction for Augustus_model.g6643.t1
Valid prediction for snap_scaffold_4-snap.2410-T1
Valid prediction for snap_scaffold_4-snap.2400-T1
Valid prediction for snap_scaffold_4-snap.2395-T1
Valid prediction for Augustus_model.g6638.t1
Valid prediction for snap_scaffold_4-snap.2389-T1
Valid prediction for snap_scaffold_4-snap.2418-T1
Valid prediction for Augustus_model.g6625.t1
Valid prediction for GlimmerHMM_glimmerT_10203-T1
Valid prediction for Augustus_model.g6644.t1
Valid prediction for snap_scaffold_4-snap.2419-T1
Valid prediction for snap_scaffold_4-snap.2378-T1
Valid prediction for GlimmerHMM_glimmerT_10218-T1
Valid prediction for GlimmerHMM_glimmerT_10212-T1
Valid prediction for snap_scaffold_4-snap.2401-T1
Valid prediction for snap_scaffold_4-snap.2375-T1
Valid prediction for GlimmerHMM_glimmerT_10214-T1
Valid prediction for snap_scaffold_4-snap.2392-T1
Valid prediction for snap_scaffold_4-snap.2415-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9841, rend_intergenic: 8678  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15785, rend_intergenic: 12817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46658, rend_intergenic: 44619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49105, rend_intergenic: 47110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51494, rend_intergenic: 49348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62547, rend_intergenic: 53926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71761, rend_intergenic: 70837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76110, rend_intergenic: 72345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77636, rend_intergenic: 76110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85534, rend_intergenic: 79597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92187, rend_intergenic: 86145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99512, rend_intergenic: 92361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107308, rend_intergenic: 103746  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116664, rend_intergenic: 109261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119982, rend_intergenic: 117886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124180, rend_intergenic: 122229  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132223, rend_intergenic: 124413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142643, rend_intergenic: 137163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160200, rend_intergenic: 143645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163003, rend_intergenic: 160258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165639, rend_intergenic: 163995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171222, rend_intergenic: 165777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 177472
-exon list size: 476


building trellis

0.2    
0.4    
0.6    
0.8    
1.0    
1.3    
1.5    
1.7    
1.9    
2.1    
2.3    
2.5    
2.7    
2.9    
3.1    
3.3    
3.6    
3.8    
4.0    
4.2    
4.4    
4.6    
4.8    
5.0    
5.2    
5.4    
5.6    
5.9    
6.1    
6.3    
6.5    
6.7    
6.9    
7.1    
7.3    
7.5    
7.7    
7.9    
8.2    
8.4    
8.6    
8.8    
9.0    
9.2    
9.4    
9.6    
9.8    
10.0    
10.3    
10.5    
10.7    
10.9    
11.1    
11.3    
11.5    
11.7    
11.9    
12.1    
12.3    
12.6    
12.8    
13.0    
13.2    
13.4    
13.6    
13.8    
14.0    
14.2    
14.4    
14.6    
14.9    
15.1    
15.3    
15.5    
15.7    
15.9    
16.1    
16.3    
16.5    
16.7    
16.9    
17.2    
17.4    
17.6    
17.8    
18.0    
18.2    
18.4    
18.6    
18.8    
19.0    
19.2    
19.5    
19.7    
19.9    
20.1    
20.3    
20.5    
20.7    
20.9    
21.1    
21.3    
21.5    
21.8    
22.0    
22.2    
22.4    
22.6    
22.8    
23.0    
23.2    
23.4    
23.6    
23.8    
24.1    
24.3    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.7    
25.9    
26.2    
26.4    
26.6    
26.8    
27.0    
27.2    
27.4    
27.6    
27.8    
28.0    
28.2    
28.5    
28.7    
28.9    
29.1    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.5    
30.8    
31.0    
31.2    
31.4    
31.6    
31.8    
32.0    
32.2    
32.4    
32.6    
32.8    
33.1    
33.3    
33.5    
33.7    
33.9    
34.1    
34.3    
34.5    
34.7    
34.9    
35.1    
35.4    
35.6    
35.8    
36.0    
36.2    
36.4    
36.6    
36.8    
37.0    
37.2    
37.4    
37.7    
37.9    
38.1    
38.3    
38.5    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.2    
41.4    
41.6    
41.8    
42.1    
42.3    
42.5    
42.7    
42.9    
43.1    
43.3    
43.5    
43.7    
43.9    
44.1    
44.4    
44.6    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
46.0    
46.2    
46.4    
46.7    
46.9    
47.1    
47.3    
47.5    
47.7    
47.9    
48.1    
48.3    
48.5    
48.7    
49.0    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
51.0    
51.3    
51.5    
51.7    
51.9    
52.1    
52.3    
52.5    
52.7    
52.9    
53.1    
53.3    
53.6    
53.8    
54.0    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.4    
55.6    
55.9    
56.1    
56.3    
56.5    
56.7    
56.9    
57.1    
57.3    
57.5    
57.7    
57.9    
58.2    
58.4    
58.6    
58.8    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.5    
61.7    
61.9    
62.1    
62.3    
62.6    
62.8    
63.0    
63.2    
63.4    
63.6    
63.8    
64.0    
64.2    
64.4    
64.6    
64.9    
65.1    
65.3    
65.5    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.2    
67.4    
67.6    
67.8    
68.0    
68.2    
68.4    
68.6    
68.8    
69.0    
69.2    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.9    
71.1    
71.3    
71.5    
71.8    
72.0    
72.2    
72.4    
72.6    
72.8    
73.0    
73.2    
73.4    
73.6    
73.8    
74.1    
74.3    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.7    
75.9    
76.2    
76.4    
76.6    
76.8    
77.0    
77.2    
77.4    
77.6    
77.8    
78.0    
78.2    
78.5    
78.7    
78.9    
79.1    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.8    
81.0    
81.2    
81.4    
81.6    
81.8    
82.0    
82.2    
82.4    
82.6    
82.8    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.4    
85.6    
85.8    
86.0    
86.2    
86.4    
86.6    
86.8    
87.0    
87.2    
87.4    
87.7    
87.9    
88.1    
88.3    
88.5    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
92.1    
92.3    
92.5    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.1    
94.4    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
96.0    
96.2    
96.4    
96.7    
96.9    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 42 predictions from path traversal
Error with prediction: snap lend_intergenic: 9841, rend_intergenic: 8678  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15785, rend_intergenic: 12817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46658, rend_intergenic: 44619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49105, rend_intergenic: 47110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51494, rend_intergenic: 49348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62547, rend_intergenic: 53926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71761, rend_intergenic: 70837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76110, rend_intergenic: 72345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77636, rend_intergenic: 76110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85534, rend_intergenic: 79597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92187, rend_intergenic: 86145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99512, rend_intergenic: 92361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107308, rend_intergenic: 103746  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116664, rend_intergenic: 109261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119982, rend_intergenic: 117886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124180, rend_intergenic: 122229  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132223, rend_intergenic: 124413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142643, rend_intergenic: 137163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160200, rend_intergenic: 143645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163003, rend_intergenic: 160258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165639, rend_intergenic: 163995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171222, rend_intergenic: 165777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support