-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_4/scaffold_4_10625978-10778701

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_4-snap.2268-T1
Valid prediction for Augustus_model.g6581.t1
Valid prediction for snap_scaffold_4-snap.2286-T1
Valid prediction for snap_scaffold_4-snap.2276-T1
Valid prediction for snap_scaffold_4-snap.2272-T1
Valid prediction for snap_scaffold_4-snap.2288-T1
Valid prediction for snap_scaffold_4-snap.2294-T1
Valid prediction for Augustus_model.g6585.t1
Valid prediction for GlimmerHMM_glimmerT_10120-T1
Valid prediction for snap_scaffold_4-snap.2287-T1
Valid prediction for GlimmerHMM_glimmerT_10121-T1
Valid prediction for Augustus_model.g6578.t1
Valid prediction for snap_scaffold_4-snap.2300-T1
Valid prediction for snap_scaffold_4-snap.2271-T1
Valid prediction for snap_scaffold_4-snap.2277-T1
Valid prediction for GlimmerHMM_glimmerT_10123-T1
Valid prediction for snap_scaffold_4-snap.2275-T1
Valid prediction for GlimmerHMM_glimmerT_10117-T1
Valid prediction for GlimmerHMM_glimmerT_10128-T1
Valid prediction for snap_scaffold_4-snap.2291-T1
Valid prediction for Augustus_model.g6576.t1
Valid prediction for snap_scaffold_4-snap.2298-T1
Valid prediction for GlimmerHMM_glimmerT_10124-T1
Valid prediction for GlimmerHMM_glimmerT_10114-T1
Valid prediction for snap_scaffold_4-snap.2273-T1
Valid prediction for GlimmerHMM_glimmerT_10135-T1
Valid prediction for snap_scaffold_4-snap.2280-T1
Valid prediction for snap_scaffold_4-snap.2269-T1
Valid prediction for GlimmerHMM_glimmerT_10132-T1
Valid prediction for Augustus_model.g6577.t1
Valid prediction for snap_scaffold_4-snap.2290-T1
Valid prediction for snap_scaffold_4-snap.2293-T1
Valid prediction for snap_scaffold_4-snap.2274-T1
Valid prediction for GlimmerHMM_glimmerT_10130-T1
Valid prediction for snap_scaffold_4-snap.2278-T1
Valid prediction for snap_scaffold_4-snap.2284-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_4-snap.2301-T1
Valid prediction for snap_scaffold_4-snap.2283-T1
Valid prediction for Augustus_model.g6586.t1
Valid prediction for GlimmerHMM_glimmerT_10134-T1
Valid prediction for Augustus_model.g6579.t1
Valid prediction for snap_scaffold_4-snap.2296-T1
Valid prediction for Augustus_model.g6584.t1
Valid prediction for GlimmerHMM_glimmerT_10125-T1
Valid prediction for GlimmerHMM_glimmerT_10136-T1
Valid prediction for Augustus_model.g6573.t1
Valid prediction for Augustus_model.g6574.t1
Valid prediction for GlimmerHMM_glimmerT_10137-T1
Valid prediction for snap_scaffold_4-snap.2289-T1
Valid prediction for Augustus_model.g6575.t1
Valid prediction for Augustus_model.g6582.t1
Valid prediction for GlimmerHMM_glimmerT_10122-T1
Valid prediction for snap_scaffold_4-snap.2281-T1
Valid prediction for GlimmerHMM_glimmerT_10129-T1
Valid prediction for GlimmerHMM_glimmerT_10116-T1
Valid prediction for snap_scaffold_4-snap.2292-T1
Couldn't classify 23764, 23826
Sorry, prediction pasa_asmbl_42860.p1 fails validation.
(CTG)	 TC	23764-23826	GT	AGG
(AAA)	 AG	25795-25877	GT	AGG
(GGA)	 AG	26113-26209	GT	AGG
(ATG)	 AG	26287-26454	TT	GAT
-recovered pasa_asmbl_42860.p1, terminal, 26287, 26454
-recovered pasa_asmbl_42860.p1, internal, 25795, 25877
-recovered pasa_asmbl_42860.p1, internal, 26113, 26209
Valid prediction for GlimmerHMM_glimmerT_10133-T1
Valid prediction for snap_scaffold_4-snap.2299-T1
Valid prediction for snap_scaffold_4-snap.2295-T1
Valid prediction for snap_scaffold_4-snap.2270-T1
Valid prediction for snap_scaffold_4-snap.2285-T1
Valid prediction for snap_scaffold_4-snap.2279-T1
Valid prediction for snap_scaffold_4-snap.2297-T1
Valid prediction for GlimmerHMM_glimmerT_10126-T1
Valid prediction for Augustus_model.g6583.t1
Valid prediction for GlimmerHMM_glimmerT_10115-T1
Valid prediction for GlimmerHMM_glimmerT_10127-T1
Valid prediction for Augustus_model.g6580.t1
Valid prediction for GlimmerHMM_glimmerT_10119-T1
Valid prediction for GlimmerHMM_glimmerT_10131-T1
Valid prediction for GlimmerHMM_glimmerT_10118-T1
Valid prediction for snap_scaffold_4-snap.2267-T1
Valid prediction for snap_scaffold_4-snap.2282-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 30084, rend_intergenic: 27602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62030, rend_intergenic: 58860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92269, rend_intergenic: 88775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105339, rend_intergenic: 102147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124436, rend_intergenic: 120218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130800, rend_intergenic: 128546  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139584, rend_intergenic: 132751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 152724
-exon list size: 232


building trellis

0.4    
0.9    
1.3    
1.7    
2.1    
2.6    
3.0    
3.4    
3.8    
4.3    
4.7    
5.1    
5.6    
6.0    
6.4    
6.8    
7.3    
7.7    
8.1    
8.5    
9.0    
9.4    
9.8    
10.3    
10.7    
11.1    
11.5    
12.0    
12.4    
12.8    
13.2    
13.7    
14.1    
14.5    
15.0    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
17.9    
18.4    
18.8    
19.2    
19.7    
20.1    
20.5    
20.9    
21.4    
21.8    
22.2    
22.6    
23.1    
23.5    
23.9    
24.4    
24.8    
25.2    
25.6    
26.1    
26.5    
26.9    
27.4    
27.8    
28.2    
28.6    
29.1    
29.5    
29.9    
30.3    
30.8    
31.2    
31.6    
32.1    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.0    
35.5    
35.9    
36.3    
36.8    
37.2    
37.6    
38.0    
38.5    
38.9    
39.3    
39.7    
40.2    
40.6    
41.0    
41.5    
41.9    
42.3    
42.7    
43.2    
43.6    
44.0    
44.4    
44.9    
45.3    
45.7    
46.2    
46.6    
47.0    
47.4    
47.9    
48.3    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.7    
52.1    
52.6    
53.0    
53.4    
53.8    
54.3    
54.7    
55.1    
55.6    
56.0    
56.4    
56.8    
57.3    
57.7    
58.1    
58.5    
59.0    
59.4    
59.8    
60.3    
60.7    
61.1    
61.5    
62.0    
62.4    
62.8    
63.2    
63.7    
64.1    
64.5    
65.0    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
67.9    
68.4    
68.8    
69.2    
69.7    
70.1    
70.5    
70.9    
71.4    
71.8    
72.2    
72.6    
73.1    
73.5    
73.9    
74.4    
74.8    
75.2    
75.6    
76.1    
76.5    
76.9    
77.4    
77.8    
78.2    
78.6    
79.1    
79.5    
79.9    
80.3    
80.8    
81.2    
81.6    
82.1    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.0    
85.5    
85.9    
86.3    
86.8    
87.2    
87.6    
88.0    
88.5    
88.9    
89.3    
89.7    
90.2    
90.6    
91.0    
91.5    
91.9    
92.3    
92.7    
93.2    
93.6    
94.0    
94.4    
94.9    
95.3    
95.7    
96.2    
96.6    
97.0    
97.4    
97.9    
98.3    
98.7    
99.1    
99.6    
-found 22 predictions from path traversal
Error with prediction: snap lend_intergenic: 30084, rend_intergenic: 27602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62030, rend_intergenic: 58860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92269, rend_intergenic: 88775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105339, rend_intergenic: 102147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124436, rend_intergenic: 120218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130800, rend_intergenic: 128546  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139584, rend_intergenic: 132751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 139585 - 152724
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support