-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_4/scaffold_4_10027511-10116330

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_10039-T1
Valid prediction for snap_scaffold_4-snap.2136-T1
Valid prediction for GlimmerHMM_glimmerT_10034-T1
Valid prediction for pasa_asmbl_41648.p1
Valid prediction for snap_scaffold_4-snap.2149-T1
Valid prediction for Augustus_model.g6525.t1
Valid prediction for snap_scaffold_4-snap.2150-T1
Valid prediction for GlimmerHMM_glimmerT_10035-T1
Valid prediction for snap_scaffold_4-snap.2145-T1
Valid prediction for snap_scaffold_4-snap.2138-T1
Valid prediction for snap_scaffold_4-snap.2141-T1
Valid prediction for HiQ_model.g6527.t1
Valid prediction for snap_scaffold_4-snap.2151-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_10032-T1
Valid prediction for GlimmerHMM_glimmerT_10038-T1
Valid prediction for snap_scaffold_4-snap.2147-T1
Valid prediction for GlimmerHMM_glimmerT_10033-T1
Valid prediction for Augustus_model.g6519.t1
Valid prediction for GlimmerHMM_glimmerT_10030-T1
Valid prediction for GlimmerHMM_glimmerT_10029-T1
Valid prediction for snap_scaffold_4-snap.2142-T1
Valid prediction for snap_scaffold_4-snap.2146-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g6521.t1
Valid prediction for snap_scaffold_4-snap.2143-T1
Valid prediction for Augustus_model.g6526.t1
Valid prediction for Augustus_model.g6522.t1
Valid prediction for Augustus_model.g6520.t1
Valid prediction for snap_scaffold_4-snap.2134-T1
Valid prediction for GlimmerHMM_glimmerT_10037-T1
Valid prediction for snap_scaffold_4-snap.2148-T1
Valid prediction for snap_scaffold_4-snap.2139-T1
Valid prediction for GlimmerHMM_glimmerT_10031-T1
Valid prediction for Augustus_model.g6523.t1
Valid prediction for snap_scaffold_4-snap.2135-T1
Valid prediction for GlimmerHMM_glimmerT_10028-T1
Valid prediction for GlimmerHMM_glimmerT_10036-T1
Valid prediction for snap_scaffold_4-snap.2144-T1
Valid prediction for Augustus_model.g6524.t1
Valid prediction for snap_scaffold_4-snap.2137-T1
Valid prediction for snap_scaffold_4-snap.2140-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11376, rend_intergenic: 8804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18016, rend_intergenic: 11495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22281, rend_intergenic: 18058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26282, rend_intergenic: 22281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32291, rend_intergenic: 28305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57848, rend_intergenic: 32585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73527, rend_intergenic: 64311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84253, rend_intergenic: 74921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 88820
-exon list size: 211


building trellis

0.5    
0.9    
1.4    
1.9    
2.3    
2.8    
3.3    
3.8    
4.2    
4.7    
5.2    
5.6    
6.1    
6.6    
7.0    
7.5    
8.0    
8.5    
8.9    
9.4    
9.9    
10.3    
10.8    
11.3    
11.7    
12.2    
12.7    
13.1    
13.6    
14.1    
14.6    
15.0    
15.5    
16.0    
16.4    
16.9    
17.4    
17.8    
18.3    
18.8    
19.2    
19.7    
20.2    
20.7    
21.1    
21.6    
22.1    
22.5    
23.0    
23.5    
23.9    
24.4    
24.9    
25.4    
25.8    
26.3    
26.8    
27.2    
27.7    
28.2    
28.6    
29.1    
29.6    
30.0    
30.5    
31.0    
31.5    
31.9    
32.4    
32.9    
33.3    
33.8    
34.3    
34.7    
35.2    
35.7    
36.2    
36.6    
37.1    
37.6    
38.0    
38.5    
39.0    
39.4    
39.9    
40.4    
40.8    
41.3    
41.8    
42.3    
42.7    
43.2    
43.7    
44.1    
44.6    
45.1    
45.5    
46.0    
46.5    
46.9    
47.4    
47.9    
48.4    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.6    
52.1    
52.6    
53.1    
53.5    
54.0    
54.5    
54.9    
55.4    
55.9    
56.3    
56.8    
57.3    
57.7    
58.2    
58.7    
59.2    
59.6    
60.1    
60.6    
61.0    
61.5    
62.0    
62.4    
62.9    
63.4    
63.8    
64.3    
64.8    
65.3    
65.7    
66.2    
66.7    
67.1    
67.6    
68.1    
68.5    
69.0    
69.5    
70.0    
70.4    
70.9    
71.4    
71.8    
72.3    
72.8    
73.2    
73.7    
74.2    
74.6    
75.1    
75.6    
76.1    
76.5    
77.0    
77.5    
77.9    
78.4    
78.9    
79.3    
79.8    
80.3    
80.8    
81.2    
81.7    
82.2    
82.6    
83.1    
83.6    
84.0    
84.5    
85.0    
85.4    
85.9    
86.4    
86.9    
87.3    
87.8    
88.3    
88.7    
89.2    
89.7    
90.1    
90.6    
91.1    
91.5    
92.0    
92.5    
93.0    
93.4    
93.9    
94.4    
94.8    
95.3    
95.8    
96.2    
96.7    
97.2    
97.7    
98.1    
98.6    
99.1    
99.5    
-found 8 predictions from path traversal
Error with prediction: snap lend_intergenic: 11376, rend_intergenic: 8804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18016, rend_intergenic: 11495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22281, rend_intergenic: 18058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26282, rend_intergenic: 22281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32291, rend_intergenic: 28305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57848, rend_intergenic: 32585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73527, rend_intergenic: 64311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84253, rend_intergenic: 74921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support