-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_395

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7249, 7348
Sorry, prediction snap_scaffold_395-snap.3-T1 fails validation.
(ATG)	 AG	6857-6977	GT	CTG
(GGA)	 AG	7249-7348	GT	GGG
-recovered snap_scaffold_395-snap.3-T1, initial, 6857, 6977
-recovered snap_scaffold_395-snap.3-T1, internal, 6857, 6977
-recovered snap_scaffold_395-snap.3-T1, internal, 7249, 7348
Valid prediction for snap_scaffold_395-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 700, 779
Couldn't classify 5967, 6103
Sorry, prediction snap_scaffold_395-snap.1-T1 fails validation.
(GAG)	 AG	700-779	GT	GGG
(AAA)	 AG	2828-3126	GT	TGG
(GTT)	 AG	3234-3340	GT	ATG
(GAA)	 AG	3763-3969	GT	AGG
(GAA)	 AG	4327-4533	GT	AGG
(GTT)	 AG	5967-6103	GT	TGG
-recovered snap_scaffold_395-snap.1-T1, internal, 700, 779
-recovered snap_scaffold_395-snap.1-T1, internal, 2828, 3126
-recovered snap_scaffold_395-snap.1-T1, internal, 3234, 3340
-recovered snap_scaffold_395-snap.1-T1, internal, 3763, 3969
-recovered snap_scaffold_395-snap.1-T1, internal, 4327, 4533
-recovered snap_scaffold_395-snap.1-T1, internal, 5967, 6103
Valid prediction for Augustus_model.g39906.t1
Couldn't classify 2828, 3027
Sorry, prediction GlimmerHMM_glimmerT_60286-T1 fails validation.
(AAA)	 AG	2828-3027	GT	CGG
(GTT)	 AG	3234-3340	GT	ATG
(GAA)	 AG	3763-3969	GT	AGG
(GAA)	 AG	4327-4533	GT	AGG
(GTT)	 AG	5967-6138	GA	GAG
-recovered GlimmerHMM_glimmerT_60286-T1, terminal, 5967, 6138
-recovered GlimmerHMM_glimmerT_60286-T1, internal, 2828, 3027
-recovered GlimmerHMM_glimmerT_60286-T1, internal, 3234, 3340
-recovered GlimmerHMM_glimmerT_60286-T1, internal, 3763, 3969
-recovered GlimmerHMM_glimmerT_60286-T1, internal, 4327, 4533
Couldn't classify 5967, 6105
Sorry, prediction pasa_asmbl_41076.p1 fails validation.
(ATG)	 GG	2860-3027	GT	CGG
(GTT)	 AG	3234-3340	GT	ATG
(GAA)	 AG	4327-4533	GT	AGG
(GTT)	 AG	5967-6105	GA	GTG
-recovered pasa_asmbl_41076.p1, initial, 2860, 3027
-recovered pasa_asmbl_41076.p1, internal, 3234, 3340
-recovered pasa_asmbl_41076.p1, internal, 4327, 4533

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6657, rend_intergenic: 3487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7356
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6657, rend_intergenic: 3487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support