-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_394

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60285-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60285-T1 4513-4768-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_60284-T1
Couldn't classify 3571, 3889
Sorry, prediction snap_scaffold_394-snap.1-T1 fails validation.
(TCC)	 AG	3571-3889	GT	CAG
(GGA)	 AG	4427-4741	GT	TAG
(ACT)	 AG	5580-5732	GT	CAG
(TAT)	 AG	5912-5981	GT	TGG
(GTG)	 AG	5998-6197	TA	GAT
-recovered snap_scaffold_394-snap.1-T1, terminal, 5998, 6197
-recovered snap_scaffold_394-snap.1-T1, internal, 3571, 3889
-recovered snap_scaffold_394-snap.1-T1, internal, 4427, 4741
-recovered snap_scaffold_394-snap.1-T1, internal, 5580, 5732
-recovered snap_scaffold_394-snap.1-T1, internal, 5912, 5981
Valid prediction for Augustus_model.g39905.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7370
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support