-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_390

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 111, 210
Sorry, prediction Augustus_model.g39902.t1 fails validation.
(CTC)	 AG	111-210	GT	CTG
(CGT)	 AG	756-806	GT	CTG
(ATG)	 AG	985-1383	GT	TGG
(GCA)	 AG	1584-1759	TA	AAT
add_exon() Sorry, Augustus_model.g39902.t1 985-1383-initial-1 is invalid.
-recovered Augustus_model.g39902.t1, initial, 985, 1383
-recovered Augustus_model.g39902.t1, terminal, 1584, 1759
-recovered Augustus_model.g39902.t1, internal, 111, 210
-recovered Augustus_model.g39902.t1, internal, 756, 806
-recovered Augustus_model.g39902.t1, internal, 985, 1383
Couldn't classify 5838, 6013
Sorry, prediction GlimmerHMM_glimmerT_60281-T1 fails validation.
(ATG)	 AT	939-1310	GT	AGG
(GCC)	 AG	5838-6013	GT	AGG
-recovered GlimmerHMM_glimmerT_60281-T1, initial, 939, 1310
-recovered GlimmerHMM_glimmerT_60281-T1, internal, 5838, 6013

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7297, 7367
Sorry, prediction snap_scaffold_390-snap.1-T1 fails validation.
(ATG)	 AA	5066-5120	GT	AAG
(TAG)	 AG	5736-5815	GT	GGG
(ATG)	 AG	7297-7367	GT	ATG
-recovered snap_scaffold_390-snap.1-T1, initial, 5066, 5120
-recovered snap_scaffold_390-snap.1-T1, initial, 7297, 7367
-recovered snap_scaffold_390-snap.1-T1, internal, 5736, 5815
-recovered snap_scaffold_390-snap.1-T1, internal, 7297, 7367

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7442
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support