-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_389

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6802, 6889
Sorry, prediction snap_scaffold_389-snap.2-T1 fails validation.
(ATG)	 AG	6639-6746	GT	TAG
(ATT)	 AG	6802-6889	GT	ATG
-recovered snap_scaffold_389-snap.2-T1, initial, 6639, 6746
-recovered snap_scaffold_389-snap.2-T1, internal, 6639, 6746
-recovered snap_scaffold_389-snap.2-T1, internal, 6802, 6889

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60280-T1
Couldn't classify 1964, 2170
Couldn't classify 5842, 5932
Sorry, prediction snap_scaffold_389-snap.1-T1 fails validation.
(CCT)	 AG	1964-2170	GT	GTG
(GGT)	 AG	2871-2990	GT	TCG
(CTA)	 AG	3944-4522	GT	CAG
(TCT)	 AG	5842-5932	GT	GGG
-recovered snap_scaffold_389-snap.1-T1, internal, 1964, 2170
-recovered snap_scaffold_389-snap.1-T1, internal, 2871, 2990
-recovered snap_scaffold_389-snap.1-T1, internal, 3944, 4522
-recovered snap_scaffold_389-snap.1-T1, internal, 5842, 5932

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7452
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support