-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_386

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4572, 5081
Sorry, prediction pasa_asmbl_41062.p1 fails validation.
(GTC)	 AG	4572-5081	AT	AGA
Valid prediction for Augustus_model.g39898.t1
Valid prediction for GlimmerHMM_glimmerT_60274-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60274-T1 1392-1716-terminal-1 is invalid.
Valid prediction for Augustus_model.g39899.t1
Couldn't classify 6525, 6651
Sorry, prediction snap_scaffold_386-snap.4-T1 fails validation.
(ATG)	 GG	6316-6452	GT	AAG
(AGA)	 AG	6525-6651	GT	GGG
-recovered snap_scaffold_386-snap.4-T1, initial, 6316, 6452
-recovered snap_scaffold_386-snap.4-T1, internal, 6525, 6651
Valid prediction for snap_scaffold_386-snap.1-T1
Valid prediction for Augustus_model.g39897.t1
Valid prediction for GlimmerHMM_glimmerT_60276-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_386-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60275-T1
Valid prediction for snap_scaffold_386-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7491
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 5 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support