-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_384

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60272-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60272-T1 5776-6176-terminal-1 is invalid.
Couldn't classify 6783, 6917
Sorry, prediction snap_scaffold_384-snap.1-T1 fails validation.
(ATG)	 GG	3792-3927	GT	AAG
(GAG)	 AG	5776-6172	GT	AGG
(GGG)	 AG	6203-6502	GT	TAG
(CCC)	 AG	6783-6917	GT	AGG
-recovered snap_scaffold_384-snap.1-T1, initial, 3792, 3927
-recovered snap_scaffold_384-snap.1-T1, internal, 5776, 6172
-recovered snap_scaffold_384-snap.1-T1, internal, 6203, 6502
-recovered snap_scaffold_384-snap.1-T1, internal, 6783, 6917

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7504
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support