-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_38

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59526-T1
Valid prediction for snap_scaffold_38-snap.1-T1
Couldn't classify 20147, 20383
Sorry, prediction pasa_asmbl_41059.p1 fails validation.
(CAA)	 CC	20147-20383	GT	TGG
(CGT)	 AG	20716-20904	TA	GAT
-recovered pasa_asmbl_41059.p1, terminal, 20716, 20904
Valid prediction for CodingQuarry_transcript_46572-T1
Valid prediction for Augustus_model.g39425.t1
Valid prediction for Augustus_model.g39426.t1
Valid prediction for GlimmerHMM_glimmerT_59524-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_38-snap.2-T1
Valid prediction for snap_scaffold_38-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59525-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 36188
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support
	-no exons in range 1 - 18394