-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_378

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4294, 4447
Couldn't classify 6611, 6861
Sorry, prediction snap_scaffold_378-snap.3-T1 fails validation.
(CGC)	 AG	4294-4447	GT	CAG
(AGC)	 AG	5604-5880	GT	AAG
(GTT)	 AG	6611-6861	GT	AGG
-recovered snap_scaffold_378-snap.3-T1, internal, 4294, 4447
-recovered snap_scaffold_378-snap.3-T1, internal, 5604, 5880
-recovered snap_scaffold_378-snap.3-T1, internal, 6611, 6861
Valid prediction for GlimmerHMM_glimmerT_60267-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2602, 2886
Sorry, prediction snap_scaffold_378-snap.2-T1 fails validation.
(AGC)	 AG	2602-2886	GT	AGG
(CAG)	 AG	4837-4865	GC	GAG
-recovered snap_scaffold_378-snap.2-T1, terminal, 4837, 4865
-recovered snap_scaffold_378-snap.2-T1, internal, 2602, 2886
-recovered snap_scaffold_378-snap.2-T1, internal, 4837, 4865
Valid prediction for GlimmerHMM_glimmerT_60266-T1
Valid prediction for snap_scaffold_378-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5008, rend_intergenic: 4294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7609
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5008, rend_intergenic: 4294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support