-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_376

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 616, 739
Sorry, prediction Augustus_model.g39891.t1 fails validation.
(CTC)	 AG	616-739	GT	AGG
(AGA)	 AG	3329-3376	TA	AAT
-recovered Augustus_model.g39891.t1, terminal, 3329, 3376
-recovered Augustus_model.g39891.t1, internal, 616, 739
Valid prediction for GlimmerHMM_glimmerT_60264-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60264-T1 616-799-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7614
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support