-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_372

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1189, 1369
Sorry, prediction Augustus_model.g39890.t1 fails validation.
(TAA)	 AG	1189-1369	GT	CGG
(CCA)	 AG	3441-3608	GT	AGG
(GAA)	 AG	3919-4060	GT	TGG
(GTT)	 AG	4583-4594	AT	AGA
-recovered Augustus_model.g39890.t1, terminal, 4583, 4594
-recovered Augustus_model.g39890.t1, internal, 1189, 1369
-recovered Augustus_model.g39890.t1, internal, 3441, 3608
-recovered Augustus_model.g39890.t1, internal, 3919, 4060
Couldn't classify 1189, 1369
Sorry, prediction snap_scaffold_372-snap.2-T1 fails validation.
(TAA)	 AG	1189-1369	GT	CGG
(GAT)	 AG	1603-1765	GT	AGG
(GAG)	 AG	2096-2119	AC	AAA
-recovered snap_scaffold_372-snap.2-T1, terminal, 2096, 2119
-recovered snap_scaffold_372-snap.2-T1, internal, 1189, 1369
-recovered snap_scaffold_372-snap.2-T1, internal, 1603, 1765
Valid prediction for snap_scaffold_372-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_60261-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_372-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_60262-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60262-T1 2104-2801-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2192, rend_intergenic: 1189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7645
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2192, rend_intergenic: 1189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support