-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_370

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39888.t1
Couldn't classify 251, 371
Sorry, prediction snap_scaffold_370-snap.1-T1 fails validation.
(GAG)	 AG	251-371	GT	CAG
(AGA)	 AG	602-729	GT	AGG
(GAA)	 AG	858-914	GT	CGG
(GGA)	 AG	3251-3482	GG	GAG
-recovered snap_scaffold_370-snap.1-T1, terminal, 3251, 3482
-recovered snap_scaffold_370-snap.1-T1, internal, 251, 371
-recovered snap_scaffold_370-snap.1-T1, internal, 602, 729
-recovered snap_scaffold_370-snap.1-T1, internal, 858, 914
Valid prediction for snap_scaffold_370-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60258-T1
Valid prediction for Augustus_model.g39889.t1
Couldn't classify 4831, 4950
Sorry, prediction snap_scaffold_370-snap.2-T1 fails validation.
(ATG)	 AA	2707-2740	GT	AGG
(CGT)	 AG	4263-4407	GT	TCG
(TGA)	 AG	4831-4950	GT	TTG
-recovered snap_scaffold_370-snap.2-T1, initial, 2707, 2740
-recovered snap_scaffold_370-snap.2-T1, internal, 4263, 4407
-recovered snap_scaffold_370-snap.2-T1, internal, 4831, 4950

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3482, rend_intergenic: 2703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7652
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 3482, rend_intergenic: 2703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support