-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_37 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59521-T1 Valid prediction for snap_scaffold_37-snap.6-T1 Valid prediction for GlimmerHMM_glimmerT_59523-T1 Couldn't classify 2101, 2232 Sorry, prediction pasa_asmbl_41054.p1 fails validation. (AGT) TC 2101-2232 GT AGG (GTC) AG 2483-2593 GT AGG (GTG) AG 2804-2955 GT AGG (GCT) AG 3092-3272 GT AGG (GTA) AG 3645-3746 GT AGG (GTC) AG 3866-3964 GT AGG (GTG) AG 4203-4283 CT AGC -recovered pasa_asmbl_41054.p1, terminal, 4203, 4283 -recovered pasa_asmbl_41054.p1, internal, 2483, 2593 -recovered pasa_asmbl_41054.p1, internal, 2804, 2955 -recovered pasa_asmbl_41054.p1, internal, 3092, 3272 -recovered pasa_asmbl_41054.p1, internal, 3645, 3746 -recovered pasa_asmbl_41054.p1, internal, 3866, 3964 Valid prediction for snap_scaffold_37-snap.8-T1 Valid prediction for snap_scaffold_37-snap.5-T1 Valid prediction for GlimmerHMM_glimmerT_59518-T1 Valid prediction for snap_scaffold_37-snap.3-T1 Couldn't classify 455, 499 Sorry, prediction snap_scaffold_37-snap.2-T1 fails validation. (AGG) AG 455-499 GT TCG (TTG) AG 2103-2232 GT AGG (GTC) AG 2483-2593 GT AGG (GTG) AG 2804-2955 GT AGG (GCT) AG 3092-3272 GT AGG (GTA) AG 3645-3746 GT AGG (GTC) AG 3866-4021 AG GAA -recovered snap_scaffold_37-snap.2-T1, terminal, 3866, 4021 -recovered snap_scaffold_37-snap.2-T1, internal, 455, 499 -recovered snap_scaffold_37-snap.2-T1, internal, 2103, 2232 -recovered snap_scaffold_37-snap.2-T1, internal, 2483, 2593 -recovered snap_scaffold_37-snap.2-T1, internal, 2804, 2955 -recovered snap_scaffold_37-snap.2-T1, internal, 3092, 3272 -recovered snap_scaffold_37-snap.2-T1, internal, 3645, 3746 Couldn't classify 455, 474 Sorry, prediction Augustus_model.g39420.t1 fails validation. (AGG) AG 455-474 GT AGG (TTG) AG 2103-2232 GT AGG (GTC) AG 2483-2593 GT AGG (GTG) AG 2804-2955 GT AGG (GCT) AG 3092-3272 GT AGG (GTA) AG 3645-3746 GT AGG (GTC) AG 3866-3964 GT AGG (GTG) AG 4203-4283 CT AGC -recovered Augustus_model.g39420.t1, terminal, 4203, 4283 -recovered Augustus_model.g39420.t1, internal, 455, 474 -recovered Augustus_model.g39420.t1, internal, 2103, 2232 -recovered Augustus_model.g39420.t1, internal, 2483, 2593 -recovered Augustus_model.g39420.t1, internal, 2804, 2955 -recovered Augustus_model.g39420.t1, internal, 3092, 3272 -recovered Augustus_model.g39420.t1, internal, 3645, 3746 -recovered Augustus_model.g39420.t1, internal, 3866, 3964 Valid prediction for Augustus_model.g39422.t1 Valid prediction for GlimmerHMM_glimmerT_59519-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_37-snap.9-T1 Valid prediction for Augustus_model.g39421.t1 Valid prediction for snap_scaffold_37-snap.4-T1 Couldn't classify 38393, 38500 Sorry, prediction snap_scaffold_37-snap.1-T1 fails validation. (ATG) AG 37028-37350 GT TGG (TCA) AG 38012-38168 GT CAG (GAG) AG 38393-38500 GT TAG -recovered snap_scaffold_37-snap.1-T1, initial, 37028, 37350 -recovered snap_scaffold_37-snap.1-T1, internal, 37028, 37350 -recovered snap_scaffold_37-snap.1-T1, internal, 38012, 38168 -recovered snap_scaffold_37-snap.1-T1, internal, 38393, 38500 Valid prediction for GlimmerHMM_glimmerT_59520-T1 Valid prediction for snap_scaffold_37-snap.7-T1 Couldn't classify 13881, 13958 Sorry, prediction pasa_asmbl_41057.p2 fails validation. (AGA) GC 13881-13958 GT AGG (GAT) AG 14598-15076 GT AGG (CTC) AG 15243-15329 GT ACG (GCG) AG 15436-15538 GT AGG (GCC) AG 15697-15729 GC GAG -recovered pasa_asmbl_41057.p2, terminal, 15697, 15729 -recovered pasa_asmbl_41057.p2, internal, 14598, 15076 -recovered pasa_asmbl_41057.p2, internal, 15243, 15329 -recovered pasa_asmbl_41057.p2, internal, 15436, 15538 -recovered pasa_asmbl_41057.p2, internal, 15697, 15729 Valid prediction for Augustus_model.g39424.t1 Valid prediction for Augustus_model.g39423.t1 Valid prediction for GlimmerHMM_glimmerT_59522-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1487, rend_intergenic: 455 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25585, rend_intergenic: 22947 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29061, rend_intergenic: 26258 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 38514 -exon list size: 92 building trellis 1.1 2.1 3.2 4.3 5.3 6.4 7.4 8.5 9.6 10.6 11.7 12.8 13.8 14.9 16.0 17.0 18.1 19.1 20.2 21.3 22.3 23.4 24.5 25.5 26.6 27.7 28.7 29.8 30.9 31.9 33.0 34.0 35.1 36.2 37.2 38.3 39.4 40.4 41.5 42.6 43.6 44.7 45.7 46.8 47.9 48.9 50.0 51.1 52.1 53.2 54.3 55.3 56.4 57.4 58.5 59.6 60.6 61.7 62.8 63.8 64.9 66.0 67.0 68.1 69.1 70.2 71.3 72.3 73.4 74.5 75.5 76.6 77.7 78.7 79.8 80.9 81.9 83.0 84.0 85.1 86.2 87.2 88.3 89.4 90.4 91.5 92.6 93.6 94.7 95.7 96.8 97.9 98.9 -found 6 predictions from path traversal Error with prediction: snap lend_intergenic: 1487, rend_intergenic: 455 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25585, rend_intergenic: 22947 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29061, rend_intergenic: 26258 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 6 predictions persist after filtering for low support