-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_369

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_369-snap.1-T1
Couldn't classify 5731, 5823
Sorry, prediction snap_scaffold_369-snap.2-T1 fails validation.
(ATG)	 CT	2535-2632	GT	AGG
(GTG)	 AG	2747-2879	GT	GGG
(GAA)	 AG	5731-5823	GT	TGG
-recovered snap_scaffold_369-snap.2-T1, initial, 2535, 2632
-recovered snap_scaffold_369-snap.2-T1, internal, 2747, 2879
-recovered snap_scaffold_369-snap.2-T1, internal, 5731, 5823

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5203, 5432
Couldn't classify 5453, 5532
Couldn't classify 5573, 6030
Sorry, prediction CodingQuarry_transcript_46562-T1 fails validation.
(ATG)	 CT	5203-5432	CT	ACC
(CTC)	 AC	5453-5532	CT	ACC
(CTC)	 AC	5573-6030	CG	AAC
Couldn't classify 5203, 5432
Couldn't classify 5453, 5532
Couldn't classify 5573, 5844
Couldn't classify 5905, 5928
Couldn't classify 5977, 6030
Sorry, prediction CodingQuarry_transcript_46563-T1 fails validation.
(ATG)	 CT	5203-5432	CT	ACC
(CTC)	 AC	5453-5532	CT	ACC
(CTC)	 AC	5573-5844	CT	ATC
(CTG)	 AC	5905-5928	CT	ACC
(CTG)	 AC	5977-6030	CG	AAC
Couldn't classify 30, 83
Sorry, prediction snap_scaffold_369-snap.3-T1 fails validation.
(AGG)	 AG	30-83	GT	CGG
(TCA)	 AG	441-803	GT	AGG
(GGT)	 AG	3162-3470	GT	AGG
(CGG)	 AG	4787-4921	AA	AGA
-recovered snap_scaffold_369-snap.3-T1, terminal, 4787, 4921
-recovered snap_scaffold_369-snap.3-T1, internal, 30, 83
-recovered snap_scaffold_369-snap.3-T1, internal, 441, 803
-recovered snap_scaffold_369-snap.3-T1, internal, 3162, 3470
Valid prediction for GlimmerHMM_glimmerT_60256-T1
Valid prediction for GlimmerHMM_glimmerT_60257-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5823, rend_intergenic: 2735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7655
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5823, rend_intergenic: 2735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support