-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_367

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60255-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60255-T1 6800-7019-terminal-1 is invalid.
Couldn't classify 4184, 4245
Couldn't classify 6837, 6988
Sorry, prediction snap_scaffold_367-snap.2-T1 fails validation.
(GCC)	 AG	4184-4245	GT	GGG
(CCC)	 AG	6837-6988	GT	AGG
-recovered snap_scaffold_367-snap.2-T1, internal, 4184, 4245
-recovered snap_scaffold_367-snap.2-T1, internal, 6837, 6988

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3431, 3510
Couldn't classify 7310, 7376
Sorry, prediction snap_scaffold_367-snap.1-T1 fails validation.
(AGG)	 AG	3431-3510	GT	AGG
(GGT)	 AG	3718-3760	GT	TGG
(CAT)	 AG	7310-7376	GT	TGG
-recovered snap_scaffold_367-snap.1-T1, internal, 3431, 3510
-recovered snap_scaffold_367-snap.1-T1, internal, 3718, 3760
-recovered snap_scaffold_367-snap.1-T1, internal, 7310, 7376

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4257, rend_intergenic: 4184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7687
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4257, rend_intergenic: 4184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support