-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_366

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 78, 197
Sorry, prediction snap_scaffold_366-snap.2-T1 fails validation.
(CTG)	 AG	78-197	GT	TGG
(GGC)	 AG	1998-2065	GT	GGG
(GGA)	 AG	2184-2355	GT	CAG
(AAT)	 AG	2446-3129	AG	GAA
-recovered snap_scaffold_366-snap.2-T1, terminal, 2446, 3129
-recovered snap_scaffold_366-snap.2-T1, internal, 78, 197
-recovered snap_scaffold_366-snap.2-T1, internal, 1998, 2065
-recovered snap_scaffold_366-snap.2-T1, internal, 2184, 2355
Valid prediction for snap_scaffold_366-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 316, 419
Sorry, prediction Augustus_model.g39887.t1 fails validation.
(CGG)	 AG	316-419	GT	AGG
(CAG)	 AG	864-1088	GT	AGG
(TGG)	 AG	1474-1557	GT	CAG
(TAA)	 AG	2630-2822	GT	AGG
(TGA)	 AG	5442-5565	CC	AGC
-recovered Augustus_model.g39887.t1, terminal, 5442, 5565
-recovered Augustus_model.g39887.t1, internal, 316, 419
-recovered Augustus_model.g39887.t1, internal, 864, 1088
-recovered Augustus_model.g39887.t1, internal, 1474, 1557
-recovered Augustus_model.g39887.t1, internal, 2630, 2822
Couldn't classify 316, 419
Sorry, prediction GlimmerHMM_glimmerT_60254-T1 fails validation.
(CGG)	 AG	316-419	GT	AGG
(CAG)	 AG	864-1088	GT	AGG
(TGG)	 AG	1474-1557	GT	CAG
(TAA)	 AG	2630-2805	GT	ACG
(GAT)	 AG	5410-5565	CC	AGC
-recovered GlimmerHMM_glimmerT_60254-T1, terminal, 5410, 5565
-recovered GlimmerHMM_glimmerT_60254-T1, internal, 316, 419
-recovered GlimmerHMM_glimmerT_60254-T1, internal, 864, 1088
-recovered GlimmerHMM_glimmerT_60254-T1, internal, 1474, 1557
-recovered GlimmerHMM_glimmerT_60254-T1, internal, 2630, 2805
Couldn't classify 316, 419
Sorry, prediction snap_scaffold_366-snap.1-T1 fails validation.
(CGG)	 AG	316-419	GT	AGG
(CAG)	 AG	864-1088	GT	AGG
(TGG)	 AG	1474-1557	GT	CAG
(TAA)	 AG	2630-2822	GT	AGG
(TGA)	 AG	5442-5535	GT	ACG
(TCC)	 AG	7461-7679	GG	GAG
-recovered snap_scaffold_366-snap.1-T1, terminal, 7461, 7679
-recovered snap_scaffold_366-snap.1-T1, internal, 316, 419
-recovered snap_scaffold_366-snap.1-T1, internal, 864, 1088
-recovered snap_scaffold_366-snap.1-T1, internal, 1474, 1557
-recovered snap_scaffold_366-snap.1-T1, internal, 2630, 2822
-recovered snap_scaffold_366-snap.1-T1, internal, 5442, 5535
Valid prediction for Augustus_model.g39886.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7392, rend_intergenic: 78  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7707
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 7392, rend_intergenic: 78  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support