-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_365

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60252-T1
Couldn't classify 5428, 5630
Sorry, prediction snap_scaffold_365-snap.2-T1 fails validation.
(ATG)	 AA	1832-1979	GT	GGG
(GCA)	 AG	3938-4097	GT	GGG
(ACT)	 AG	4987-4998	GT	TAG
(TCC)	 AG	5125-5238	GT	CAG
(CCT)	 AG	5428-5630	GT	AGG
-recovered snap_scaffold_365-snap.2-T1, initial, 1832, 1979
-recovered snap_scaffold_365-snap.2-T1, internal, 3938, 4097
-recovered snap_scaffold_365-snap.2-T1, internal, 4987, 4998
-recovered snap_scaffold_365-snap.2-T1, internal, 5125, 5238
-recovered snap_scaffold_365-snap.2-T1, internal, 5428, 5630

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2032, 2071
Couldn't classify 6912, 6985
Sorry, prediction snap_scaffold_365-snap.1-T1 fails validation.
(CTG)	 AG	2032-2071	GT	ACG
(GCT)	 AG	2729-3116	GT	AAG
(GAC)	 AG	6912-6985	GT	AGG
-recovered snap_scaffold_365-snap.1-T1, internal, 2032, 2071
-recovered snap_scaffold_365-snap.1-T1, internal, 2729, 3116
-recovered snap_scaffold_365-snap.1-T1, internal, 6912, 6985
Valid prediction for GlimmerHMM_glimmerT_60253-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60253-T1 1983-2202-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5692, rend_intergenic: 1832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7723
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5692, rend_intergenic: 1832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support