-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_362

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60250-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60250-T1 1239-1420-terminal-1 is invalid.
Couldn't classify 1458, 1952
Sorry, prediction snap_scaffold_362-snap.1-T1 fails validation.
(CCC)	 AG	1458-1952	GT	CGG
(GTG)	 AG	2704-2992	GT	TGG
(GGT)	 AG	2998-3189	GT	AGG
(GTG)	 AG	3213-3308	GT	AGG
(GTG)	 AG	3319-3423	GT	TGG
(GTG)	 AG	3471-3698	GT	AGG
(GTG)	 AG	3733-3837	GT	AGG
(GTG)	 AG	4456-4480	GT	AGG
(GAA)	 AG	5270-5331	GA	AGG
-recovered snap_scaffold_362-snap.1-T1, terminal, 5270, 5331
-recovered snap_scaffold_362-snap.1-T1, internal, 1458, 1952
-recovered snap_scaffold_362-snap.1-T1, internal, 2704, 2992
-recovered snap_scaffold_362-snap.1-T1, internal, 2998, 3189
-recovered snap_scaffold_362-snap.1-T1, internal, 3213, 3308
-recovered snap_scaffold_362-snap.1-T1, internal, 3319, 3423
-recovered snap_scaffold_362-snap.1-T1, internal, 3471, 3698
-recovered snap_scaffold_362-snap.1-T1, internal, 3733, 3837
-recovered snap_scaffold_362-snap.1-T1, internal, 4456, 4480
Sorry, intron length (4) is less than minimum required (10)
Sorry, intron length (9) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60251-T1
Valid prediction for snap_scaffold_362-snap.3-T1
Valid prediction for snap_scaffold_362-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5331, rend_intergenic: 1747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7747
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5331, rend_intergenic: 1747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support