-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_36

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 38172, 38284
Sorry, prediction snap_scaffold_36-snap.9-T1 fails validation.
(ATG)	 AG	36274-36398	GT	GGG
(AAC)	 AG	37083-37340	GT	AGG
(CCA)	 AG	37357-37486	GT	TGG
(ATG)	 AG	37943-38097	GT	AGG
(GCT)	 AG	38172-38284	GT	AGG
-recovered snap_scaffold_36-snap.9-T1, initial, 36274, 36398
-recovered snap_scaffold_36-snap.9-T1, initial, 37943, 38097
-recovered snap_scaffold_36-snap.9-T1, internal, 36274, 36398
-recovered snap_scaffold_36-snap.9-T1, internal, 37083, 37340
-recovered snap_scaffold_36-snap.9-T1, internal, 37357, 37486
-recovered snap_scaffold_36-snap.9-T1, internal, 37943, 38097
-recovered snap_scaffold_36-snap.9-T1, internal, 38172, 38284
Valid prediction for snap_scaffold_36-snap.8-T1
Valid prediction for snap_scaffold_36-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59516-T1
Valid prediction for GlimmerHMM_glimmerT_59517-T1
Valid prediction for Augustus_model.g39419.t1
Valid prediction for Augustus_model.g39418.t1
Valid prediction for snap_scaffold_36-snap.5-T1
Valid prediction for GlimmerHMM_glimmerT_59514-T1
Couldn't classify 1309, 1390
Sorry, prediction snap_scaffold_36-snap.1-T1 fails validation.
(CGC)	 AG	1309-1390	GT	CTG
(CCG)	 AG	2650-2847	GT	GGG
(GGC)	 AG	2957-3041	GT	AAG
(TAC)	 AG	4457-4572	TG	AAT
-recovered snap_scaffold_36-snap.1-T1, terminal, 2957, 3041
-recovered snap_scaffold_36-snap.1-T1, terminal, 4457, 4572
-recovered snap_scaffold_36-snap.1-T1, internal, 1309, 1390
-recovered snap_scaffold_36-snap.1-T1, internal, 2650, 2847
-recovered snap_scaffold_36-snap.1-T1, internal, 2957, 3041
Valid prediction for GlimmerHMM_glimmerT_59513-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 36785, 37111
Sorry, prediction snap_scaffold_36-snap.2-T1 fails validation.
(ATG)	 TC	33445-33456	GT	AGG
(GTC)	 AG	34014-34122	GT	AGG
(TGG)	 AG	35596-35659	GT	AAG
(CCC)	 AG	35757-35910	GT	CTG
(GGG)	 AG	36785-37111	GT	GGG
-recovered snap_scaffold_36-snap.2-T1, initial, 33445, 33456
-recovered snap_scaffold_36-snap.2-T1, internal, 34014, 34122
-recovered snap_scaffold_36-snap.2-T1, internal, 35596, 35659
-recovered snap_scaffold_36-snap.2-T1, internal, 35757, 35910
-recovered snap_scaffold_36-snap.2-T1, internal, 36785, 37111
Couldn't classify 376, 639
Sorry, prediction snap_scaffold_36-snap.7-T1 fails validation.
(TGT)	 AG	376-639	GT	CAG
(GGG)	 AG	1193-1543	GT	GGG
(CCT)	 AG	12352-12416	GT	GGG
(ATC)	 AG	12579-12658	GT	GGG
(AGG)	 AG	12722-12893	GT	AGG
(GTC)	 AG	16508-16780	CA	AGC
-recovered snap_scaffold_36-snap.7-T1, terminal, 16508, 16780
-recovered snap_scaffold_36-snap.7-T1, internal, 376, 639
-recovered snap_scaffold_36-snap.7-T1, internal, 1193, 1543
-recovered snap_scaffold_36-snap.7-T1, internal, 12352, 12416
-recovered snap_scaffold_36-snap.7-T1, internal, 12579, 12658
-recovered snap_scaffold_36-snap.7-T1, internal, 12722, 12893
Valid prediction for snap_scaffold_36-snap.6-T1
Valid prediction for snap_scaffold_36-snap.4-T1
Valid prediction for Augustus_model.g39417.t1
Valid prediction for GlimmerHMM_glimmerT_59515-T1
Valid prediction for GlimmerHMM_glimmerT_59512-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4572, rend_intergenic: 1488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38223, rend_intergenic: 22579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 38598
-exon list size: 73


building trellis

1.3    
2.7    
4.0    
5.3    
6.7    
8.0    
9.3    
10.7    
12.0    
13.3    
14.7    
16.0    
17.3    
18.7    
20.0    
21.3    
22.7    
24.0    
25.3    
26.7    
28.0    
29.3    
30.7    
32.0    
33.3    
34.7    
36.0    
37.3    
38.7    
40.0    
41.3    
42.7    
44.0    
45.3    
46.7    
48.0    
49.3    
50.7    
52.0    
53.3    
54.7    
56.0    
57.3    
58.7    
60.0    
61.3    
62.7    
64.0    
65.3    
66.7    
68.0    
69.3    
70.7    
72.0    
73.3    
74.7    
76.0    
77.3    
78.7    
80.0    
81.3    
82.7    
84.0    
85.3    
86.7    
88.0    
89.3    
90.7    
92.0    
93.3    
94.7    
96.0    
97.3    
98.7    
-found 8 predictions from path traversal
Error with prediction: snap lend_intergenic: 4572, rend_intergenic: 1488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38223, rend_intergenic: 22579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support