-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_358

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7492, 7585
Sorry, prediction snap_scaffold_358-snap.3-T1 fails validation.
(ATG)	 GG	5157-5301	GT	TAG
(AGG)	 AG	7492-7585	GT	GGG
-recovered snap_scaffold_358-snap.3-T1, initial, 5157, 5301
-recovered snap_scaffold_358-snap.3-T1, internal, 7492, 7585
Couldn't classify 7485, 7568
Sorry, prediction GlimmerHMM_glimmerT_60247-T1 fails validation.
(ATG)	 GC	1199-1396	GT	AGG
(AAG)	 AG	7485-7568	GT	ATG
-recovered GlimmerHMM_glimmerT_60247-T1, initial, 1199, 1396
-recovered GlimmerHMM_glimmerT_60247-T1, internal, 7485, 7568
Couldn't classify 256, 307
Sorry, prediction Augustus_model.g39884.t1 fails validation.
(TCG)	 AG	256-307	GT	CCG
(AGA)	 AG	757-833	GT	CCG
(ACC)	 AG	1147-1426	GC	GAG
-recovered Augustus_model.g39884.t1, terminal, 1147, 1426
-recovered Augustus_model.g39884.t1, internal, 256, 307
-recovered Augustus_model.g39884.t1, internal, 757, 833
-recovered Augustus_model.g39884.t1, internal, 1147, 1426
Couldn't classify 1183, 1396
Sorry, prediction snap_scaffold_358-snap.2-T1 fails validation.
(CAG)	 AG	1183-1396	GT	AGG
(CTA)	 AG	2393-2737	GT	AGG
(GCA)	 AG	4789-5151	GA	AGG
-recovered snap_scaffold_358-snap.2-T1, terminal, 4789, 5151
-recovered snap_scaffold_358-snap.2-T1, internal, 1183, 1396
-recovered snap_scaffold_358-snap.2-T1, internal, 2393, 2737

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5350, 5368
Couldn't classify 6835, 6980
Sorry, prediction snap_scaffold_358-snap.1-T1 fails validation.
(AGA)	 AG	5350-5368	GT	AGG
(CCT)	 AG	6331-6722	GT	ACG
(TTG)	 AG	6835-6980	GT	TGG
-recovered snap_scaffold_358-snap.1-T1, internal, 5350, 5368
-recovered snap_scaffold_358-snap.1-T1, internal, 6331, 6722
-recovered snap_scaffold_358-snap.1-T1, internal, 6835, 6980

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2441, rend_intergenic: 1183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7790
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2441, rend_intergenic: 1183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support