-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_357

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60245-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60245-T1 3753-4278-terminal-1 is invalid.
Valid prediction for snap_scaffold_357-snap.2-T1
Valid prediction for Augustus_model.g39883.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7379, 7777
Sorry, prediction snap_scaffold_357-snap.1-T1 fails validation.
(ATG)	 AT	7152-7163	GT	CTG
(ATT)	 AG	7379-7777	GT	GGG
-recovered snap_scaffold_357-snap.1-T1, initial, 7152, 7163
-recovered snap_scaffold_357-snap.1-T1, internal, 7379, 7777
Couldn't classify 7458, 7791
Sorry, prediction Augustus_model.g39882.t1 fails validation.
(ATG)	 AA	6078-6186	GT	TGG
(GTG)	 AG	7458-7791		GA
-recovered Augustus_model.g39882.t1, initial, 6078, 6186
Couldn't classify 243, 486
Sorry, prediction GlimmerHMM_glimmerT_60246-T1 fails validation.
(GCT)	 AG	243-486	GT	GAG
(GAG)	 AG	2574-2858	GC	AGG
-recovered GlimmerHMM_glimmerT_60246-T1, terminal, 2574, 2858
-recovered GlimmerHMM_glimmerT_60246-T1, internal, 243, 486
-recovered GlimmerHMM_glimmerT_60246-T1, internal, 2574, 2858

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7791
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support