-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_356

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_356-snap.1-T1
Couldn't classify 3707, 3796
Sorry, prediction GlimmerHMM_glimmerT_60244-T1 fails validation.
(ATG)	 AC	668-1105	GT	ATG
(ACC)	 AG	1481-2168	GT	GTG
(ATA)	 AG	3707-3796	GT	CAG
-recovered GlimmerHMM_glimmerT_60244-T1, initial, 668, 1105
-recovered GlimmerHMM_glimmerT_60244-T1, internal, 1481, 2168
-recovered GlimmerHMM_glimmerT_60244-T1, internal, 3707, 3796
Valid prediction for Augustus_model.g39881.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7798
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support