-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3554

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61879-T1
Couldn't classify 268, 442
Couldn't classify 651, 703
Sorry, prediction snap_scaffold_3554-snap.1-T1 fails validation.
(CAA)	 AG	268-442	GT	AGG
(GCC)	 AG	651-703	GT	AGG
add_exon() Sorry, snap_scaffold_3554-snap.1-T1 268-442-terminal-3 is invalid.
-recovered snap_scaffold_3554-snap.1-T1, terminal, 268, 442
-recovered snap_scaffold_3554-snap.1-T1, internal, 268, 442
-recovered snap_scaffold_3554-snap.1-T1, internal, 651, 703
Couldn't classify 268, 442
Sorry, prediction Augustus_model.g41188.t1 fails validation.
(CAA)	 AG	268-442	GT	AGG
(CCA)	 AG	785-921	CT	GAC
add_exon() Sorry, Augustus_model.g41188.t1 268-442-terminal-3 is invalid.
-recovered Augustus_model.g41188.t1, terminal, 268, 442
-recovered Augustus_model.g41188.t1, terminal, 785, 921
-recovered Augustus_model.g41188.t1, internal, 268, 442

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1000
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support