-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_355 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 5814, 5923 Sorry, prediction GlimmerHMM_glimmerT_60243-T1 fails validation. (ATG) TG 1378-1452 GT AGG (GGC) AG 1919-1997 GT CGG (AGA) AG 2292-2388 GT GGG (GAT) AG 3135-3219 GT AGG (ATC) AG 3525-3645 GT GGG (ACG) AG 4274-4355 GT TGG (TGT) AG 5814-5923 GT CGG -recovered GlimmerHMM_glimmerT_60243-T1, initial, 1378, 1452 -recovered GlimmerHMM_glimmerT_60243-T1, internal, 1919, 1997 -recovered GlimmerHMM_glimmerT_60243-T1, internal, 2292, 2388 -recovered GlimmerHMM_glimmerT_60243-T1, internal, 3135, 3219 -recovered GlimmerHMM_glimmerT_60243-T1, internal, 3525, 3645 -recovered GlimmerHMM_glimmerT_60243-T1, internal, 4274, 4355 -recovered GlimmerHMM_glimmerT_60243-T1, internal, 5814, 5923 Valid prediction for CodingQuarry_transcript_46553-T1 Couldn't classify 3525, 3644 Sorry, prediction pasa_asmbl_41036.p1 fails validation. (ATG) AG 532-563 GT ACG (GTA) AG 1147-1189 GT AGG (CCA) AG 1372-1452 GT AGG (GGC) AG 1919-1997 GT CGG (AGA) AG 2292-2388 GT GGG (GAT) AG 3135-3219 GT AGG (ATC) AG 3525-3644 GG TGG -recovered pasa_asmbl_41036.p1, initial, 532, 563 -recovered pasa_asmbl_41036.p1, internal, 532, 563 -recovered pasa_asmbl_41036.p1, internal, 1147, 1189 -recovered pasa_asmbl_41036.p1, internal, 1372, 1452 -recovered pasa_asmbl_41036.p1, internal, 1919, 1997 -recovered pasa_asmbl_41036.p1, internal, 2292, 2388 -recovered pasa_asmbl_41036.p1, internal, 3135, 3219 Couldn't classify 102, 137 Sorry, prediction Augustus_model.g39880.t1 fails validation. (AAA) AG 102-137 GT GGG (TGT) AG 496-563 GT ACG (GTA) AG 1147-1189 GT AGG (CCA) AG 1372-1452 GT AGG (GGC) AG 1919-1997 GT CGG (AGA) AG 2292-2388 GT GGG (GAT) AG 3135-3219 GT AGG (ATC) AG 3525-3645 GT GGG (ACG) AG 4274-4351 GT ATG (TAG) AG 5439-5500 GT GGG (ATC) AG 5567-5579 GT TGG (AGA) AG 5837-5923 GT CGG (TGG) AG 6360-6436 AG GAA -recovered Augustus_model.g39880.t1, terminal, 6360, 6436 -recovered Augustus_model.g39880.t1, internal, 102, 137 -recovered Augustus_model.g39880.t1, internal, 496, 563 -recovered Augustus_model.g39880.t1, internal, 1147, 1189 -recovered Augustus_model.g39880.t1, internal, 1372, 1452 -recovered Augustus_model.g39880.t1, internal, 1919, 1997 -recovered Augustus_model.g39880.t1, internal, 2292, 2388 -recovered Augustus_model.g39880.t1, internal, 3135, 3219 -recovered Augustus_model.g39880.t1, internal, 3525, 3645 -recovered Augustus_model.g39880.t1, internal, 4274, 4351 -recovered Augustus_model.g39880.t1, internal, 5439, 5500 -recovered Augustus_model.g39880.t1, internal, 5567, 5579 -recovered Augustus_model.g39880.t1, internal, 5837, 5923 Couldn't classify 102, 137 Sorry, prediction snap_scaffold_355-snap.1-T1 fails validation. (AAA) AG 102-137 GT GGG (TGT) AG 496-563 GT ACG (GTA) AG 1147-1189 GT AGG (CCA) AG 1372-1497 GT TGG (GGC) AG 1919-1997 GT CGG (AGA) AG 2292-2388 GT GGG (GAT) AG 3135-3219 GT AGG (ATC) AG 3525-3641 GT CTG (ACG) AG 4274-4355 GT TGG (AGA) AG 5837-5934 GG GAG -recovered snap_scaffold_355-snap.1-T1, terminal, 5837, 5934 -recovered snap_scaffold_355-snap.1-T1, internal, 102, 137 -recovered snap_scaffold_355-snap.1-T1, internal, 496, 563 -recovered snap_scaffold_355-snap.1-T1, internal, 1147, 1189 -recovered snap_scaffold_355-snap.1-T1, internal, 1372, 1497 -recovered snap_scaffold_355-snap.1-T1, internal, 1919, 1997 -recovered snap_scaffold_355-snap.1-T1, internal, 2292, 2388 -recovered snap_scaffold_355-snap.1-T1, internal, 3135, 3219 -recovered snap_scaffold_355-snap.1-T1, internal, 3525, 3641 -recovered snap_scaffold_355-snap.1-T1, internal, 4274, 4355 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_355-snap.2-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5934, rend_intergenic: 1295 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 7801 -exon list size: 45 building trellis 2.1 4.3 6.4 8.5 10.6 12.8 14.9 17.0 19.1 21.3 23.4 25.5 27.7 29.8 31.9 34.0 36.2 38.3 40.4 42.6 44.7 46.8 48.9 51.1 53.2 55.3 57.4 59.6 61.7 63.8 66.0 68.1 70.2 72.3 74.5 76.6 78.7 80.9 83.0 85.1 87.2 89.4 91.5 93.6 95.7 97.9 -found 1 predictions from path traversal Error with prediction: snap lend_intergenic: 5934, rend_intergenic: 1295 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support