-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3542

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61877-T1
Couldn't classify 512, 679
Couldn't classify 871, 967
Sorry, prediction snap_scaffold_3542-snap.1-T1 fails validation.
(GTT)	 AG	512-679	GT	AGG
(GGC)	 AG	789-843	GT	GGG
(GGC)	 AG	871-967	GT	GGG
-recovered snap_scaffold_3542-snap.1-T1, internal, 512, 679
-recovered snap_scaffold_3542-snap.1-T1, internal, 789, 843
-recovered snap_scaffold_3542-snap.1-T1, internal, 871, 967
Couldn't classify 512, 679
Sorry, prediction Augustus_model.g41185.t1 fails validation.
(GTT)	 AG	512-679	GT	AGG
-recovered Augustus_model.g41185.t1, internal, 512, 679

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1002
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support