-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_354

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1195, 1373
Couldn't classify 6153, 6364
Sorry, prediction snap_scaffold_354-snap.1-T1 fails validation.
(AAG)	 AG	1195-1373	GT	TAG
(CTA)	 AG	3025-3078	GT	ACG
(ATC)	 AG	3168-3218	GT	AGG
(GTG)	 AG	3834-3953	GT	AGG
(GTA)	 AG	4197-4324	GT	CAG
(GAC)	 AG	4682-4783	GT	AAG
(AGA)	 AG	6153-6364	GT	CAG
-recovered snap_scaffold_354-snap.1-T1, internal, 1195, 1373
-recovered snap_scaffold_354-snap.1-T1, internal, 3025, 3078
-recovered snap_scaffold_354-snap.1-T1, internal, 3168, 3218
-recovered snap_scaffold_354-snap.1-T1, internal, 3834, 3953
-recovered snap_scaffold_354-snap.1-T1, internal, 4197, 4324
-recovered snap_scaffold_354-snap.1-T1, internal, 4682, 4783
-recovered snap_scaffold_354-snap.1-T1, internal, 6153, 6364
Valid prediction for Augustus_model.g39879.t1
Couldn't classify 3168, 3218
Sorry, prediction GlimmerHMM_glimmerT_60242-T1 fails validation.
(ATC)	 AG	3168-3218	GT	AGG
(GTG)	 AG	3834-3953	GT	AGG
(GTA)	 AG	4197-4324	GT	CAG
(GAC)	 AG	4682-4783	GT	AAG
(AGA)	 AG	6153-6393	AA	AGA
-recovered GlimmerHMM_glimmerT_60242-T1, terminal, 6153, 6393
-recovered GlimmerHMM_glimmerT_60242-T1, internal, 3168, 3218
-recovered GlimmerHMM_glimmerT_60242-T1, internal, 3834, 3953
-recovered GlimmerHMM_glimmerT_60242-T1, internal, 4197, 4324
-recovered GlimmerHMM_glimmerT_60242-T1, internal, 4682, 4783

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7813
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support