-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_353

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_353-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_60241-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 118, 166
Sorry, prediction Augustus_model.g39878.t1 fails validation.
(GTA)	 AG	118-166	GT	AGG
(GTA)	 AG	518-567	CT	AGC
-recovered Augustus_model.g39878.t1, terminal, 518, 567
-recovered Augustus_model.g39878.t1, internal, 118, 166
Couldn't classify 118, 166
Sorry, prediction snap_scaffold_353-snap.2-T1 fails validation.
(GTA)	 AG	118-166	GT	AGG
(GAC)	 AG	607-803	GT	AGG
(CCC)	 AG	3779-3838	GT	AGG
(AGT)	 AG	6458-6556	GG	AAG
-recovered snap_scaffold_353-snap.2-T1, terminal, 6458, 6556
-recovered snap_scaffold_353-snap.2-T1, internal, 118, 166
-recovered snap_scaffold_353-snap.2-T1, internal, 607, 803
-recovered snap_scaffold_353-snap.2-T1, internal, 3779, 3838

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6093, rend_intergenic: 1258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7813
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6093, rend_intergenic: 1258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support