-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_352

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 226, 373
Couldn't classify 3169, 3533
Sorry, prediction snap_scaffold_352-snap.1-T1 fails validation.
(ATT)	 AG	226-373	GT	GAG
(AGA)	 AG	2924-3068	GT	CAG
(GTT)	 AG	3169-3533	GT	CAG
-recovered snap_scaffold_352-snap.1-T1, internal, 226, 373
-recovered snap_scaffold_352-snap.1-T1, internal, 2924, 3068
-recovered snap_scaffold_352-snap.1-T1, internal, 3169, 3533
Valid prediction for GlimmerHMM_glimmerT_60239-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_352-snap.3-T1
Valid prediction for snap_scaffold_352-snap.2-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_60240-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3533, rend_intergenic: 1253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7815
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3533, rend_intergenic: 1253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support