-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3518

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 377, 520
Sorry, prediction GlimmerHMM_glimmerT_61872-T1 fails validation.
(AGT)	 AG	377-520	GT	CGG
(GTA)	 AG	769-887	GT	AAG
-recovered GlimmerHMM_glimmerT_61872-T1, terminal, 769, 887
-recovered GlimmerHMM_glimmerT_61872-T1, internal, 377, 520
-recovered GlimmerHMM_glimmerT_61872-T1, internal, 769, 887
Couldn't classify 45, 99
Couldn't classify 769, 883
Sorry, prediction snap_scaffold_3518-snap.1-T1 fails validation.
(CCC)	 AG	45-99	GT	AGG
(AGT)	 AG	377-520	GT	CGG
(GTA)	 AG	769-883	GT	AAG
-recovered snap_scaffold_3518-snap.1-T1, internal, 45, 99
-recovered snap_scaffold_3518-snap.1-T1, internal, 377, 520
-recovered snap_scaffold_3518-snap.1-T1, internal, 769, 883
Couldn't classify 45, 99
Couldn't classify 769, 884
Sorry, prediction pasa_asmbl_41032.p1 fails validation.
(CCC)	 AG	45-99	GT	AGG
(AGT)	 AG	377-520	GT	CGG
(GTA)	 AG	769-884	TA	AGT
-recovered pasa_asmbl_41032.p1, internal, 45, 99
-recovered pasa_asmbl_41032.p1, internal, 377, 520
Valid prediction for HiQ_model.g41178.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1006
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support