-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_348

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7256, 7500
Sorry, prediction GlimmerHMM_glimmerT_60235-T1 fails validation.
(ATG)	 AC	4161-4209	GT	CGG
(GGG)	 AG	6708-6818	GT	CGG
(GCC)	 AG	7256-7500	GT	AGG
-recovered GlimmerHMM_glimmerT_60235-T1, initial, 4161, 4209
-recovered GlimmerHMM_glimmerT_60235-T1, internal, 6708, 6818
-recovered GlimmerHMM_glimmerT_60235-T1, internal, 7256, 7500
Valid prediction for Augustus_model.g39876.t1
Couldn't classify 7256, 7500
Sorry, prediction snap_scaffold_348-snap.4-T1 fails validation.
(ATG)	 AC	4161-4217	GT	AGG
(AGA)	 AG	4371-4476	GT	ATG
(GGG)	 AG	6708-6818	GT	CGG
(GCC)	 AG	7256-7500	GT	AGG
-recovered snap_scaffold_348-snap.4-T1, initial, 4161, 4217
-recovered snap_scaffold_348-snap.4-T1, internal, 4371, 4476
-recovered snap_scaffold_348-snap.4-T1, internal, 6708, 6818
-recovered snap_scaffold_348-snap.4-T1, internal, 7256, 7500
Valid prediction for snap_scaffold_348-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 362, 487
Sorry, prediction snap_scaffold_348-snap.3-T1 fails validation.
(CTA)	 AG	362-487	GT	GGG
(ACG)	 AG	1060-1154	GT	ACG
(GCA)	 AG	2557-2674	GT	AGG
(AAT)	 AG	3984-4151	CC	GAC
-recovered snap_scaffold_348-snap.3-T1, terminal, 3984, 4151
-recovered snap_scaffold_348-snap.3-T1, internal, 362, 487
-recovered snap_scaffold_348-snap.3-T1, internal, 1060, 1154
-recovered snap_scaffold_348-snap.3-T1, internal, 2557, 2674
Couldn't classify 6874, 7209
Sorry, prediction Augustus_model.g39875.t1 fails validation.
(ATG)	 CA	6406-6747	GT	AGG
(GTG)	 AG	6874-7209	GT	TGG
-recovered Augustus_model.g39875.t1, initial, 6406, 6747
-recovered Augustus_model.g39875.t1, internal, 6874, 7209
Valid prediction for GlimmerHMM_glimmerT_60234-T1
Couldn't classify 6874, 7227
Sorry, prediction snap_scaffold_348-snap.1-T1 fails validation.
(ATG)	 CT	4626-4647	GT	AAG
(GAA)	 AG	6368-6747	GT	AGG
(GTG)	 AG	6874-7227	GT	TGG
-recovered snap_scaffold_348-snap.1-T1, initial, 4626, 4647
-recovered snap_scaffold_348-snap.1-T1, internal, 6368, 6747
-recovered snap_scaffold_348-snap.1-T1, internal, 6874, 7227

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3247, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7511, rend_intergenic: 4161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7872
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 3247, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7511, rend_intergenic: 4161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support