-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_346

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_346-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_346-snap.2-T1
Couldn't classify 2938, 3121
Sorry, prediction GlimmerHMM_glimmerT_60232-T1 fails validation.
(AAG)	 AG	2938-3121	GT	GGG
(ATC)	 AG	5066-5170	GT	AGG
(GGG)	 AG	5371-5558	GT	GGG
(ATC)	 AG	5673-5781	GT	CGG
(GTG)	 AG	5877-5973	GT	GAG
(GAC)	 AG	6172-6308	AG	AGA
add_exon() Sorry, GlimmerHMM_glimmerT_60232-T1 5877-5973-terminal-3 is invalid.
-recovered GlimmerHMM_glimmerT_60232-T1, terminal, 5877, 5973
-recovered GlimmerHMM_glimmerT_60232-T1, terminal, 6172, 6308
-recovered GlimmerHMM_glimmerT_60232-T1, internal, 2938, 3121
-recovered GlimmerHMM_glimmerT_60232-T1, internal, 5066, 5170
-recovered GlimmerHMM_glimmerT_60232-T1, internal, 5371, 5558
-recovered GlimmerHMM_glimmerT_60232-T1, internal, 5673, 5781
-recovered GlimmerHMM_glimmerT_60232-T1, internal, 5877, 5973
Valid prediction for Augustus_model.g39874.t1
Valid prediction for snap_scaffold_346-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4054, rend_intergenic: 1696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7902
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4054, rend_intergenic: 1696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support