-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_344

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7546, 7662
Sorry, prediction GlimmerHMM_glimmerT_60231-T1 fails validation.
(ATG)	 TC	20-91	GT	TGG
(CTG)	 AG	4935-5014	GT	AGG
(ATC)	 AG	7546-7662	GT	GAG
-recovered GlimmerHMM_glimmerT_60231-T1, initial, 20, 91
-recovered GlimmerHMM_glimmerT_60231-T1, internal, 4935, 5014
-recovered GlimmerHMM_glimmerT_60231-T1, internal, 7546, 7662

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7791, 7927
Sorry, prediction Augustus_model.g39873.t1 fails validation.
(ATG)	 AC	6204-6315	GT	GGG
(CCC)	 AG	7791-7927		TT
-recovered Augustus_model.g39873.t1, initial, 6204, 6315
Couldn't classify 36, 82
Couldn't classify 7791, 7876
Sorry, prediction snap_scaffold_344-snap.1-T1 fails validation.
(TCC)	 AG	36-82	GT	AGG
(GGG)	 AG	289-385	GT	TGG
(GAT)	 AG	930-1057	GT	AGG
(AGG)	 AG	4894-5411	GT	GAG
(ATA)	 AG	6156-6315	GT	GGG
(CCC)	 AG	7791-7876	GT	CCG
-recovered snap_scaffold_344-snap.1-T1, internal, 36, 82
-recovered snap_scaffold_344-snap.1-T1, internal, 289, 385
-recovered snap_scaffold_344-snap.1-T1, internal, 930, 1057
-recovered snap_scaffold_344-snap.1-T1, internal, 4894, 5411
-recovered snap_scaffold_344-snap.1-T1, internal, 6156, 6315
-recovered snap_scaffold_344-snap.1-T1, internal, 7791, 7876

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7927
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support