-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3439

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 785, 998
Sorry, prediction snap_scaffold_3439-snap.1-T1 fails validation.
(ATG)	 CA	440-660	GT	AGG
(GCT)	 AG	785-998	GT	AGG
-recovered snap_scaffold_3439-snap.1-T1, initial, 440, 660
-recovered snap_scaffold_3439-snap.1-T1, internal, 785, 998
Couldn't classify 1, 67
Sorry, prediction Augustus_model.g41159.t1 fails validation.
(AGA)	 GA	1-67	GT	AGG
(GTG)	 AG	464-660	GT	AGG
(GCT)	 AG	785-1010	GA	GAG
-recovered Augustus_model.g41159.t1, terminal, 785, 1010
-recovered Augustus_model.g41159.t1, internal, 464, 660
Couldn't classify 785, 935
Sorry, prediction GlimmerHMM_glimmerT_61858-T1 fails validation.
(ATG)	 CA	440-660	GT	AGG
(GCT)	 AG	785-935	GT	AGG
-recovered GlimmerHMM_glimmerT_61858-T1, initial, 440, 660
-recovered GlimmerHMM_glimmerT_61858-T1, internal, 785, 935

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1018
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support