-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_342

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_342-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2848, 2961
Sorry, prediction GlimmerHMM_glimmerT_60230-T1 fails validation.
(CTT)	 AG	2848-2961	GT	GGG
(CTA)	 AG	4517-4914	TC	GAT
-recovered GlimmerHMM_glimmerT_60230-T1, terminal, 4517, 4914
-recovered GlimmerHMM_glimmerT_60230-T1, internal, 2848, 2961
Couldn't classify 4524, 4908
Sorry, prediction snap_scaffold_342-snap.1-T1 fails validation.
(ATG)	 GC	2687-2705	GT	AAG
(CTT)	 AG	2848-2961	GT	GGG
(GAT)	 AG	3719-3815	GT	GGG
(ACC)	 AG	4524-4908	GT	TTG
-recovered snap_scaffold_342-snap.1-T1, initial, 2687, 2705
-recovered snap_scaffold_342-snap.1-T1, internal, 2848, 2961
-recovered snap_scaffold_342-snap.1-T1, internal, 3719, 3815
-recovered snap_scaffold_342-snap.1-T1, internal, 4524, 4908

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5284, rend_intergenic: 4288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7970
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5284, rend_intergenic: 4288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support