-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_341

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1778, 1926
Sorry, prediction Augustus_model.g39872.t1 fails validation.
(CAC)	 AG	1778-1926	GT	CTG
(GAG)	 AG	4841-5120	CC	GAC
-recovered Augustus_model.g39872.t1, terminal, 4841, 5120
-recovered Augustus_model.g39872.t1, internal, 1778, 1926
Valid prediction for GlimmerHMM_glimmerT_60227-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60227-T1 1733-1920-terminal-1 is invalid.
Couldn't classify 1778, 1926
Sorry, prediction snap_scaffold_341-snap.2-T1 fails validation.
(CAC)	 AG	1778-1926	GT	CTG
(GAG)	 AG	4841-5086	GT	AGG
(AGG)	 AG	6432-6738	GG	AAG
-recovered snap_scaffold_341-snap.2-T1, terminal, 6432, 6738
-recovered snap_scaffold_341-snap.2-T1, internal, 1778, 1926
-recovered snap_scaffold_341-snap.2-T1, internal, 4841, 5086
Valid prediction for GlimmerHMM_glimmerT_60228-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1533, 1617
Couldn't classify 6073, 6258
Sorry, prediction snap_scaffold_341-snap.1-T1 fails validation.
(GAG)	 AG	1533-1617	GT	GTG
(CAT)	 AG	2945-3046	GT	TGG
(AGA)	 AG	3150-3500	GT	TGG
(CCA)	 AG	6073-6258	GT	TAG
-recovered snap_scaffold_341-snap.1-T1, internal, 1533, 1617
-recovered snap_scaffold_341-snap.1-T1, internal, 2945, 3046
-recovered snap_scaffold_341-snap.1-T1, internal, 3150, 3500
-recovered snap_scaffold_341-snap.1-T1, internal, 6073, 6258
Valid prediction for GlimmerHMM_glimmerT_60229-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60229-T1 529-685-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6448, rend_intergenic: 1778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7980
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6448, rend_intergenic: 1778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support