-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_34

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 15509, 15549
Sorry, prediction pasa_asmbl_41007.p1 fails validation.
(ACC)	 NN	15509-15549	GT	AAG
(ACA)	 AG	15824-15950	GT	ACG
(GTG)	 AG	16153-16323	GT	TGG
(GCG)	 AG	16660-16683	CA	GAC
-recovered pasa_asmbl_41007.p1, terminal, 16660, 16683
-recovered pasa_asmbl_41007.p1, internal, 15824, 15950
-recovered pasa_asmbl_41007.p1, internal, 16153, 16323
Valid prediction for GlimmerHMM_glimmerT_59499-T1
Valid prediction for snap_scaffold_34-snap.6-T1
Valid prediction for snap_scaffold_34-snap.2-T1
Valid prediction for snap_scaffold_34-snap.4-T1
Valid prediction for HiQ_model.g39406.t1
Valid prediction for GlimmerHMM_glimmerT_59497-T1
Valid prediction for Augustus_model.g39407.t1
Valid prediction for GlimmerHMM_glimmerT_59498-T1
Valid prediction for GlimmerHMM_glimmerT_59495-T1
Valid prediction for snap_scaffold_34-snap.1-T1
Valid prediction for CodingQuarry_transcript_46536-T1
Valid prediction for pasa_asmbl_41008.p1
Valid prediction for CodingQuarry_transcript_46537-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_34-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59500-T1
Valid prediction for snap_scaffold_34-snap.8-T1
Valid prediction for snap_scaffold_34-snap.5-T1
Valid prediction for GlimmerHMM_glimmerT_59496-T1
Valid prediction for snap_scaffold_34-snap.7-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 21828, rend_intergenic: 21302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26560, rend_intergenic: 21830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 40508
-exon list size: 49


building trellis

2.0    
3.9    
5.9    
7.8    
9.8    
11.8    
13.7    
15.7    
17.6    
19.6    
21.6    
23.5    
25.5    
27.5    
29.4    
31.4    
33.3    
35.3    
37.3    
39.2    
41.2    
43.1    
45.1    
47.1    
49.0    
51.0    
52.9    
54.9    
56.9    
58.8    
60.8    
62.7    
64.7    
66.7    
68.6    
70.6    
72.5    
74.5    
76.5    
78.4    
80.4    
82.4    
84.3    
86.3    
88.2    
90.2    
92.2    
94.1    
96.1    
98.0    
-found 5 predictions from path traversal
Error with prediction: snap lend_intergenic: 21828, rend_intergenic: 21302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26560, rend_intergenic: 21830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15541
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support