-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_339

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1356, 1562
Sorry, prediction snap_scaffold_339-snap.2-T1 fails validation.
(ATT)	 AG	1356-1562	GT	GGG
(CTT)	 AG	2621-2757	AA	AGA
-recovered snap_scaffold_339-snap.2-T1, terminal, 2621, 2757
-recovered snap_scaffold_339-snap.2-T1, internal, 1356, 1562
Couldn't classify 7490, 7699
Sorry, prediction snap_scaffold_339-snap.1-T1 fails validation.
(ATG)	 GT	3035-3338	GT	AGG
(GTA)	 AG	5368-5537	GT	AGG
(GTG)	 AG	7490-7699	GT	TGG
-recovered snap_scaffold_339-snap.1-T1, initial, 3035, 3338
-recovered snap_scaffold_339-snap.1-T1, internal, 5368, 5537
-recovered snap_scaffold_339-snap.1-T1, internal, 7490, 7699
Valid prediction for HiQ_model.g39870.t1
Couldn't classify 7490, 7702
Sorry, prediction pasa_asmbl_41000.p1 fails validation.
(ATG)	 AC	5388-5537	GT	AGG
(GTG)	 AG	7490-7702	AG	TGA
-recovered pasa_asmbl_41000.p1, initial, 5388, 5537
Valid prediction for GlimmerHMM_glimmerT_60226-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7998
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support