-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3379

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61847-T1
Couldn't classify 242, 405
Couldn't classify 677, 760
Sorry, prediction snap_scaffold_3379-snap.1-T1 fails validation.
(CCG)	 AG	242-405	GT	AGG
(TTC)	 AG	677-760	GT	ATG
-recovered snap_scaffold_3379-snap.1-T1, internal, 242, 405
-recovered snap_scaffold_3379-snap.1-T1, internal, 677, 760
Couldn't classify 242, 405
Sorry, prediction Augustus_model.g41140.t1 fails validation.
(CCG)	 AG	242-405	GT	AGG
(TCT)	 AG	668-775	TC	AAT
-recovered Augustus_model.g41140.t1, terminal, 668, 775
-recovered Augustus_model.g41140.t1, internal, 242, 405

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1025
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support